miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23093 3' -54.8 NC_005178.1 + 14064 0.67 0.589727
Target:  5'- uGCCUuGAGCagccGGCCGAgCAGCggGCCg -3'
miRNA:   3'- cCGGAcCUCGc---UUGGCUaGUCGa-UGG- -5'
23093 3' -54.8 NC_005178.1 + 29963 0.67 0.589727
Target:  5'- cGGCCUGGcGUGGAaCGcgCAGCccgGCa -3'
miRNA:   3'- -CCGGACCuCGCUUgGCuaGUCGa--UGg -5'
23093 3' -54.8 NC_005178.1 + 27989 0.67 0.578529
Target:  5'- cGGUCUGGAG-GAugCcGUC-GUUACCu -3'
miRNA:   3'- -CCGGACCUCgCUugGcUAGuCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 32738 0.67 0.567378
Target:  5'- uGGCCUGGAcguaguaggcGCGGcGgCGAUUGGCgauCCa -3'
miRNA:   3'- -CCGGACCU----------CGCU-UgGCUAGUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 25368 0.67 0.567378
Target:  5'- uGGCCgGGAGCuguCCGGUuugggggagaCAGCcgACCa -3'
miRNA:   3'- -CCGGaCCUCGcuuGGCUA----------GUCGa-UGG- -5'
23093 3' -54.8 NC_005178.1 + 10327 0.67 0.556282
Target:  5'- gGGCCgggcgcggaGGGGCGAAgCGcgCcgGGCUGCg -3'
miRNA:   3'- -CCGGa--------CCUCGCUUgGCuaG--UCGAUGg -5'
23093 3' -54.8 NC_005178.1 + 7903 0.67 0.556282
Target:  5'- cGGuCCUGGAGCu-ACUGcgCAGCaagggGCUa -3'
miRNA:   3'- -CC-GGACCUCGcuUGGCuaGUCGa----UGG- -5'
23093 3' -54.8 NC_005178.1 + 35969 0.68 0.54525
Target:  5'- cGGUCguaaaGGGGCGggUCGcaacGCUGCCg -3'
miRNA:   3'- -CCGGa----CCUCGCuuGGCuaguCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 23361 0.68 0.54525
Target:  5'- uGGCCaGGcGCGGAUUGAacucCAGCUccGCCu -3'
miRNA:   3'- -CCGGaCCuCGCUUGGCUa---GUCGA--UGG- -5'
23093 3' -54.8 NC_005178.1 + 20734 0.68 0.544151
Target:  5'- cGGCCUGGuuuuGCauguccuGGGCCGGcaGGCUgGCCa -3'
miRNA:   3'- -CCGGACCu---CG-------CUUGGCUagUCGA-UGG- -5'
23093 3' -54.8 NC_005178.1 + 1837 0.68 0.53429
Target:  5'- cGuCCUGGAGCGGACC-AUCcGCcauguccucgGCCa -3'
miRNA:   3'- cC-GGACCUCGCUUGGcUAGuCGa---------UGG- -5'
23093 3' -54.8 NC_005178.1 + 37187 0.68 0.533198
Target:  5'- cGCCUGGAGgcCGAguuugacGCC-AUC-GCUACCg -3'
miRNA:   3'- cCGGACCUC--GCU-------UGGcUAGuCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 28432 0.68 0.531017
Target:  5'- cGGCCUGGcuauccaacaaugaGGuCGuaauCCGGUCGGCauccGCCa -3'
miRNA:   3'- -CCGGACC--------------UC-GCuu--GGCUAGUCGa---UGG- -5'
23093 3' -54.8 NC_005178.1 + 24170 0.68 0.523408
Target:  5'- -aCCUGGuggcuGGCGAugUGAUCcGCUugGCCa -3'
miRNA:   3'- ccGGACC-----UCGCUugGCUAGuCGA--UGG- -5'
23093 3' -54.8 NC_005178.1 + 16334 0.68 0.523408
Target:  5'- cGGCCggGGAGCGggUU--UCGG-UGCCg -3'
miRNA:   3'- -CCGGa-CCUCGCuuGGcuAGUCgAUGG- -5'
23093 3' -54.8 NC_005178.1 + 31710 0.68 0.509392
Target:  5'- cGGCCUGGcuugagggcguaauGGCGGccguuGCgGGUCAGgUAUCc -3'
miRNA:   3'- -CCGGACC--------------UCGCU-----UGgCUAGUCgAUGG- -5'
23093 3' -54.8 NC_005178.1 + 2920 0.68 0.50191
Target:  5'- cGGCCaGGu-CGAGCCG--CAGCUGCUc -3'
miRNA:   3'- -CCGGaCCucGCUUGGCuaGUCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 25194 0.68 0.50191
Target:  5'- uGGCCUGG-GCGGcacguugacgGgCGGUUucgAGCUGCUg -3'
miRNA:   3'- -CCGGACCuCGCU----------UgGCUAG---UCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 10263 0.68 0.50191
Target:  5'- cGCCUGGAGCuu-CUGcUCGGCguuCCu -3'
miRNA:   3'- cCGGACCUCGcuuGGCuAGUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 7340 0.68 0.491307
Target:  5'- cGCCUGGAGCcGACaGAggGGCgcgugACCa -3'
miRNA:   3'- cCGGACCUCGcUUGgCUagUCGa----UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.