miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23093 5' -49.5 NC_005178.1 + 31824 0.66 0.918981
Target:  5'- aCCGauGCGGCGAucuGCuCCGggg-UCGCUGGa -3'
miRNA:   3'- -GGC--CGUCGUU---UG-GGCauuaAGUGACU- -5'
23093 5' -49.5 NC_005178.1 + 29562 0.66 0.918981
Target:  5'- cCCGGCAGCcccuggacGGCCUcgGGUUCGUUGAg -3'
miRNA:   3'- -GGCCGUCGu-------UUGGGcaUUAAGUGACU- -5'
23093 5' -49.5 NC_005178.1 + 1573 0.66 0.912321
Target:  5'- gUCGGCAGCGuugcGACCCGccccUUUACg-- -3'
miRNA:   3'- -GGCCGUCGU----UUGGGCauu-AAGUGacu -5'
23093 5' -49.5 NC_005178.1 + 6236 0.67 0.865959
Target:  5'- cCCGGCgcGGCGccaggcgcauAGCCCGg----CGCUGGg -3'
miRNA:   3'- -GGCCG--UCGU----------UUGGGCauuaaGUGACU- -5'
23093 5' -49.5 NC_005178.1 + 4769 0.68 0.819679
Target:  5'- uCCGGCuucGGCAAAUCCGU--UUCGgccgcCUGGa -3'
miRNA:   3'- -GGCCG---UCGUUUGGGCAuuAAGU-----GACU- -5'
23093 5' -49.5 NC_005178.1 + 13167 0.68 0.809703
Target:  5'- uCCcGCAGCAcGCCCaGgcAUUCGCcGAg -3'
miRNA:   3'- -GGcCGUCGUuUGGG-CauUAAGUGaCU- -5'
23093 5' -49.5 NC_005178.1 + 5654 0.68 0.805653
Target:  5'- aCCGGCAGCGccauCCCGgcgacgucggUCACgcgggGAa -3'
miRNA:   3'- -GGCCGUCGUuu--GGGCauua------AGUGa----CU- -5'
23093 5' -49.5 NC_005178.1 + 9259 0.68 0.799515
Target:  5'- cCCGGCAGCucccgcAGCgCCGgucacccCACUGAc -3'
miRNA:   3'- -GGCCGUCGu-----UUG-GGCauuaa--GUGACU- -5'
23093 5' -49.5 NC_005178.1 + 17531 0.69 0.778555
Target:  5'- gCCGGCAGCGGGCgCGg-----GCUGGc -3'
miRNA:   3'- -GGCCGUCGUUUGgGCauuaagUGACU- -5'
23093 5' -49.5 NC_005178.1 + 15905 0.69 0.767808
Target:  5'- aCCGGCcGCAAAgCUGgu-UUCAaCUGAa -3'
miRNA:   3'- -GGCCGuCGUUUgGGCauuAAGU-GACU- -5'
23093 5' -49.5 NC_005178.1 + 25655 0.69 0.745852
Target:  5'- aCCGGCAGCAGGCCga------GCUGGg -3'
miRNA:   3'- -GGCCGUCGUUUGGgcauuaagUGACU- -5'
23093 5' -49.5 NC_005178.1 + 8312 0.7 0.711968
Target:  5'- gCCGGCgccGGCcGACUCGUAGaUCguGCUGAc -3'
miRNA:   3'- -GGCCG---UCGuUUGGGCAUUaAG--UGACU- -5'
23093 5' -49.5 NC_005178.1 + 25152 0.7 0.711968
Target:  5'- gCCGcCAGCAAGCCCGcga---GCUGAu -3'
miRNA:   3'- -GGCcGUCGUUUGGGCauuaagUGACU- -5'
23093 5' -49.5 NC_005178.1 + 7439 0.71 0.665598
Target:  5'- gCCGGCAGC--ACCCGUuacaUCACc-- -3'
miRNA:   3'- -GGCCGUCGuuUGGGCAuua-AGUGacu -5'
23093 5' -49.5 NC_005178.1 + 27128 0.73 0.548839
Target:  5'- gUGGCAGCGAGCCaCGUAAauuucUUCGCc-- -3'
miRNA:   3'- gGCCGUCGUUUGG-GCAUU-----AAGUGacu -5'
23093 5' -49.5 NC_005178.1 + 7517 1.12 0.00157
Target:  5'- gCCGGCAGCAAACCCGUAAUUCACUGAa -3'
miRNA:   3'- -GGCCGUCGUUUGGGCAUUAAGUGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.