Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23093 | 5' | -49.5 | NC_005178.1 | + | 29562 | 0.66 | 0.918981 |
Target: 5'- cCCGGCAGCcccuggacGGCCUcgGGUUCGUUGAg -3' miRNA: 3'- -GGCCGUCGu-------UUGGGcaUUAAGUGACU- -5' |
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23093 | 5' | -49.5 | NC_005178.1 | + | 31824 | 0.66 | 0.918981 |
Target: 5'- aCCGauGCGGCGAucuGCuCCGggg-UCGCUGGa -3' miRNA: 3'- -GGC--CGUCGUU---UG-GGCauuaAGUGACU- -5' |
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23093 | 5' | -49.5 | NC_005178.1 | + | 1573 | 0.66 | 0.912321 |
Target: 5'- gUCGGCAGCGuugcGACCCGccccUUUACg-- -3' miRNA: 3'- -GGCCGUCGU----UUGGGCauu-AAGUGacu -5' |
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23093 | 5' | -49.5 | NC_005178.1 | + | 6236 | 0.67 | 0.865959 |
Target: 5'- cCCGGCgcGGCGccaggcgcauAGCCCGg----CGCUGGg -3' miRNA: 3'- -GGCCG--UCGU----------UUGGGCauuaaGUGACU- -5' |
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23093 | 5' | -49.5 | NC_005178.1 | + | 4769 | 0.68 | 0.819679 |
Target: 5'- uCCGGCuucGGCAAAUCCGU--UUCGgccgcCUGGa -3' miRNA: 3'- -GGCCG---UCGUUUGGGCAuuAAGU-----GACU- -5' |
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23093 | 5' | -49.5 | NC_005178.1 | + | 13167 | 0.68 | 0.809703 |
Target: 5'- uCCcGCAGCAcGCCCaGgcAUUCGCcGAg -3' miRNA: 3'- -GGcCGUCGUuUGGG-CauUAAGUGaCU- -5' |
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23093 | 5' | -49.5 | NC_005178.1 | + | 5654 | 0.68 | 0.805653 |
Target: 5'- aCCGGCAGCGccauCCCGgcgacgucggUCACgcgggGAa -3' miRNA: 3'- -GGCCGUCGUuu--GGGCauua------AGUGa----CU- -5' |
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23093 | 5' | -49.5 | NC_005178.1 | + | 9259 | 0.68 | 0.799515 |
Target: 5'- cCCGGCAGCucccgcAGCgCCGgucacccCACUGAc -3' miRNA: 3'- -GGCCGUCGu-----UUG-GGCauuaa--GUGACU- -5' |
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23093 | 5' | -49.5 | NC_005178.1 | + | 17531 | 0.69 | 0.778555 |
Target: 5'- gCCGGCAGCGGGCgCGg-----GCUGGc -3' miRNA: 3'- -GGCCGUCGUUUGgGCauuaagUGACU- -5' |
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23093 | 5' | -49.5 | NC_005178.1 | + | 15905 | 0.69 | 0.767808 |
Target: 5'- aCCGGCcGCAAAgCUGgu-UUCAaCUGAa -3' miRNA: 3'- -GGCCGuCGUUUgGGCauuAAGU-GACU- -5' |
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23093 | 5' | -49.5 | NC_005178.1 | + | 25655 | 0.69 | 0.745852 |
Target: 5'- aCCGGCAGCAGGCCga------GCUGGg -3' miRNA: 3'- -GGCCGUCGUUUGGgcauuaagUGACU- -5' |
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23093 | 5' | -49.5 | NC_005178.1 | + | 25152 | 0.7 | 0.711968 |
Target: 5'- gCCGcCAGCAAGCCCGcga---GCUGAu -3' miRNA: 3'- -GGCcGUCGUUUGGGCauuaagUGACU- -5' |
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23093 | 5' | -49.5 | NC_005178.1 | + | 8312 | 0.7 | 0.711968 |
Target: 5'- gCCGGCgccGGCcGACUCGUAGaUCguGCUGAc -3' miRNA: 3'- -GGCCG---UCGuUUGGGCAUUaAG--UGACU- -5' |
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23093 | 5' | -49.5 | NC_005178.1 | + | 7439 | 0.71 | 0.665598 |
Target: 5'- gCCGGCAGC--ACCCGUuacaUCACc-- -3' miRNA: 3'- -GGCCGUCGuuUGGGCAuua-AGUGacu -5' |
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23093 | 5' | -49.5 | NC_005178.1 | + | 27128 | 0.73 | 0.548839 |
Target: 5'- gUGGCAGCGAGCCaCGUAAauuucUUCGCc-- -3' miRNA: 3'- gGCCGUCGUUUGG-GCAUU-----AAGUGacu -5' |
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23093 | 5' | -49.5 | NC_005178.1 | + | 7517 | 1.12 | 0.00157 |
Target: 5'- gCCGGCAGCAAACCCGUAAUUCACUGAa -3' miRNA: 3'- -GGCCGUCGUUUGGGCAUUAAGUGACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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