miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23094 3' -54 NC_005178.1 + 34418 0.66 0.652826
Target:  5'- cUCAGGAGaagacCGGCucGACCUCCcuGGCGc -3'
miRNA:   3'- uAGUUCUUgua--GCCG--CUGGAGG--UCGC- -5'
23094 3' -54 NC_005178.1 + 11081 0.66 0.641334
Target:  5'- uUgGAGAAC-UCGGCGACCguauccgaaaCAGCc -3'
miRNA:   3'- uAgUUCUUGuAGCCGCUGGag--------GUCGc -5'
23094 3' -54 NC_005178.1 + 5738 0.66 0.629832
Target:  5'- gAUCGcc-GCAUCgguGGCGGCCUCgGGCa -3'
miRNA:   3'- -UAGUucuUGUAG---CCGCUGGAGgUCGc -5'
23094 3' -54 NC_005178.1 + 19942 0.67 0.618333
Target:  5'- cGUC-AGAcCA-CGGCGACg-CCAGCGg -3'
miRNA:   3'- -UAGuUCUuGUaGCCGCUGgaGGUCGC- -5'
23094 3' -54 NC_005178.1 + 24748 0.67 0.595384
Target:  5'- ----cGAACAUggCGGCcgcGACCUCCAGgGa -3'
miRNA:   3'- uaguuCUUGUA--GCCG---CUGGAGGUCgC- -5'
23094 3' -54 NC_005178.1 + 36138 0.67 0.572571
Target:  5'- ---cGGAACAUCGaaGAUgUCCAGCGu -3'
miRNA:   3'- uaguUCUUGUAGCcgCUGgAGGUCGC- -5'
23094 3' -54 NC_005178.1 + 13236 0.67 0.572571
Target:  5'- gGUCGGGGccgGCGUCGGCaGACC--CAGCa -3'
miRNA:   3'- -UAGUUCU---UGUAGCCG-CUGGagGUCGc -5'
23094 3' -54 NC_005178.1 + 22312 0.67 0.571436
Target:  5'- cGUCGAGGGCAucuUCGuGCgcagcuauccgccGACCUuCCGGCGu -3'
miRNA:   3'- -UAGUUCUUGU---AGC-CG-------------CUGGA-GGUCGC- -5'
23094 3' -54 NC_005178.1 + 20931 0.67 0.561241
Target:  5'- -cCGAGGuCAUCGGCGuGCCggUAGCGg -3'
miRNA:   3'- uaGUUCUuGUAGCCGC-UGGagGUCGC- -5'
23094 3' -54 NC_005178.1 + 10635 0.68 0.549971
Target:  5'- cUgAAGGGCAUCGGUGaauuGCUUCCcGCGc -3'
miRNA:   3'- uAgUUCUUGUAGCCGC----UGGAGGuCGC- -5'
23094 3' -54 NC_005178.1 + 18352 0.68 0.538773
Target:  5'- -cCAGGAGCGccUGGCGGCaCUCUAcGCGg -3'
miRNA:   3'- uaGUUCUUGUa-GCCGCUG-GAGGU-CGC- -5'
23094 3' -54 NC_005178.1 + 2131 0.68 0.505682
Target:  5'- cGUCAGGcu-GUCGGUGGCggCCAGCGc -3'
miRNA:   3'- -UAGUUCuugUAGCCGCUGgaGGUCGC- -5'
23094 3' -54 NC_005178.1 + 10288 0.69 0.484112
Target:  5'- aGUCGAGcAGC-UCGGCGGCacgUCCuGGCGg -3'
miRNA:   3'- -UAGUUC-UUGuAGCCGCUGg--AGG-UCGC- -5'
23094 3' -54 NC_005178.1 + 7101 0.69 0.462993
Target:  5'- gGUCGAGuGCAgCGaGU-ACCUCCAGCGg -3'
miRNA:   3'- -UAGUUCuUGUaGC-CGcUGGAGGUCGC- -5'
23094 3' -54 NC_005178.1 + 31718 0.69 0.456751
Target:  5'- cUUGAGGGCGUaaUGGCGGCCguugcgggucagguaUCCGGCGu -3'
miRNA:   3'- uAGUUCUUGUA--GCCGCUGG---------------AGGUCGC- -5'
23094 3' -54 NC_005178.1 + 17241 0.7 0.442367
Target:  5'- ---cGGAACGcUGcGCGACUUCCAGCGc -3'
miRNA:   3'- uaguUCUUGUaGC-CGCUGGAGGUCGC- -5'
23094 3' -54 NC_005178.1 + 5309 0.7 0.43225
Target:  5'- ---uGGAAC--UGGcCGACCUCCAGCGc -3'
miRNA:   3'- uaguUCUUGuaGCC-GCUGGAGGUCGC- -5'
23094 3' -54 NC_005178.1 + 25979 0.71 0.374525
Target:  5'- gAUCAAGGACAguuUCGGUGGCgUCgGcGCGa -3'
miRNA:   3'- -UAGUUCUUGU---AGCCGCUGgAGgU-CGC- -5'
23094 3' -54 NC_005178.1 + 20477 0.72 0.330572
Target:  5'- -cCAGGuacuCAaUGGCGGCCUCCGGCc -3'
miRNA:   3'- uaGUUCuu--GUaGCCGCUGGAGGUCGc -5'
23094 3' -54 NC_005178.1 + 34484 0.72 0.328895
Target:  5'- aGUCGGGAACGcucauguccgggCGGCgGACCUUCGGCa -3'
miRNA:   3'- -UAGUUCUUGUa-----------GCCG-CUGGAGGUCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.