miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23095 3' -57 NC_005178.1 + 14007 0.66 0.512195
Target:  5'- aGCCUg--CGGGCUGCGGGccagcGGAGu- -3'
miRNA:   3'- cCGGAguaGCUCGACGCCCu----CCUUgu -5'
23095 3' -57 NC_005178.1 + 24389 0.67 0.470338
Target:  5'- uGCCUgGgCGuGCUGCGGGAaccgcucacGGAugAa -3'
miRNA:   3'- cCGGAgUaGCuCGACGCCCU---------CCUugU- -5'
23095 3' -57 NC_005178.1 + 31056 0.67 0.461159
Target:  5'- uGGCCaggCGUCGccgccgcuggguuuuGCUGCccuGGAGGAACGc -3'
miRNA:   3'- -CCGGa--GUAGCu--------------CGACGc--CCUCCUUGU- -5'
23095 3' -57 NC_005178.1 + 37494 0.67 0.424461
Target:  5'- aGCgCgaaugCAUCGAGCagcucggccgauuccUGCGGGAGG-GCAu -3'
miRNA:   3'- cCG-Ga----GUAGCUCG---------------ACGCCCUCCuUGU- -5'
23095 3' -57 NC_005178.1 + 18312 0.68 0.408194
Target:  5'- uGGCCaaucgCAUCGAGCUggagcugguggaccGCGaGGuccAGGAGCGc -3'
miRNA:   3'- -CCGGa----GUAGCUCGA--------------CGC-CC---UCCUUGU- -5'
23095 3' -57 NC_005178.1 + 8063 0.68 0.392323
Target:  5'- cGGCCg---C-AGCccaGCGGGAGGAGCGu -3'
miRNA:   3'- -CCGGaguaGcUCGa--CGCCCUCCUUGU- -5'
23095 3' -57 NC_005178.1 + 21240 0.68 0.38046
Target:  5'- cGGCCgcaUCAUCGgcgucgaaccggacGGCgUGUGGGuGGAAUAa -3'
miRNA:   3'- -CCGG---AGUAGC--------------UCG-ACGCCCuCCUUGU- -5'
23095 3' -57 NC_005178.1 + 8704 1.1 0.000344
Target:  5'- uGGCCUCAUCGAGCUGCGGGAGGAACAc -3'
miRNA:   3'- -CCGGAGUAGCUCGACGCCCUCCUUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.