miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23096 5' -57.6 NC_005178.1 + 30785 0.66 0.482924
Target:  5'- -gACAUCCGccuggcagcggucgcGGCcucgaCCUGGGCCGGCGu- -3'
miRNA:   3'- caUGUAGGU---------------CUG-----GGACCCGGUCGUcc -5'
23096 5' -57.6 NC_005178.1 + 17669 0.66 0.478776
Target:  5'- -cACAUCCAuagggcGCCCauccaUGGGCCagaacucaccAGCAGGc -3'
miRNA:   3'- caUGUAGGUc-----UGGG-----ACCCGG----------UCGUCC- -5'
23096 5' -57.6 NC_005178.1 + 15580 0.66 0.468482
Target:  5'- -cACAUCCuGAUCga-GGCCgAGCAGGg -3'
miRNA:   3'- caUGUAGGuCUGGgacCCGG-UCGUCC- -5'
23096 5' -57.6 NC_005178.1 + 27871 0.66 0.458303
Target:  5'- -gACcUCCAGGCCgcccagggcaaCUGGGUCAaCGGGg -3'
miRNA:   3'- caUGuAGGUCUGG-----------GACCCGGUcGUCC- -5'
23096 5' -57.6 NC_005178.1 + 33032 0.66 0.448244
Target:  5'- uUACAUCCugggcGGcACCgaGGGCauucCGGCAGGu -3'
miRNA:   3'- cAUGUAGG-----UC-UGGgaCCCG----GUCGUCC- -5'
23096 5' -57.6 NC_005178.1 + 20808 0.67 0.428499
Target:  5'- ---gGUCCAaucaCCUGGGCCAGCGc- -3'
miRNA:   3'- caugUAGGUcug-GGACCCGGUCGUcc -5'
23096 5' -57.6 NC_005178.1 + 7070 0.67 0.428499
Target:  5'- aGUGC--CCGG-CCCUGGGCgaGGCGGu -3'
miRNA:   3'- -CAUGuaGGUCuGGGACCCGg-UCGUCc -5'
23096 5' -57.6 NC_005178.1 + 18264 0.67 0.428499
Target:  5'- -aGCAUCgacgaCGGgcucGCCCUGGGCCGuuaCAGGa -3'
miRNA:   3'- caUGUAG-----GUC----UGGGACCCGGUc--GUCC- -5'
23096 5' -57.6 NC_005178.1 + 31154 0.67 0.418821
Target:  5'- --uCGUCUggAGGCuCCUGGGCgAGCcGGa -3'
miRNA:   3'- cauGUAGG--UCUG-GGACCCGgUCGuCC- -5'
23096 5' -57.6 NC_005178.1 + 20851 0.67 0.381476
Target:  5'- uUACcUCaAGACCCUGaaaGGCCAGUaAGGa -3'
miRNA:   3'- cAUGuAGgUCUGGGAC---CCGGUCG-UCC- -5'
23096 5' -57.6 NC_005178.1 + 14548 0.68 0.372493
Target:  5'- gGU-CGUCCuuGA-CCUGGGUguGCAGGu -3'
miRNA:   3'- -CAuGUAGGu-CUgGGACCCGguCGUCC- -5'
23096 5' -57.6 NC_005178.1 + 20744 0.69 0.30593
Target:  5'- uUGCAU---G-UCCUGGGCCGGCAGGc -3'
miRNA:   3'- cAUGUAgguCuGGGACCCGGUCGUCC- -5'
23096 5' -57.6 NC_005178.1 + 13756 0.69 0.298281
Target:  5'- -cGCGUUUcucgucGGCCUUGGGCuCGGCGGGa -3'
miRNA:   3'- caUGUAGGu-----CUGGGACCCG-GUCGUCC- -5'
23096 5' -57.6 NC_005178.1 + 26799 0.69 0.282702
Target:  5'- -gGCAggccuUCCAGccgggacGCgCUGuGGCCAGCGGGg -3'
miRNA:   3'- caUGU-----AGGUC-------UGgGAC-CCGGUCGUCC- -5'
23096 5' -57.6 NC_005178.1 + 36107 0.7 0.269169
Target:  5'- aGUACAUgCC--GCCCagguUGGGCUGGCGGGu -3'
miRNA:   3'- -CAUGUA-GGucUGGG----ACCCGGUCGUCC- -5'
23096 5' -57.6 NC_005178.1 + 17108 0.71 0.223793
Target:  5'- -gACGUCCGcgUCCUGGGCCAGgCcgAGGg -3'
miRNA:   3'- caUGUAGGUcuGGGACCCGGUC-G--UCC- -5'
23096 5' -57.6 NC_005178.1 + 30284 0.73 0.170382
Target:  5'- gGUGCG--CAGGCUCUGGGCCAaGuCAGGa -3'
miRNA:   3'- -CAUGUagGUCUGGGACCCGGU-C-GUCC- -5'
23096 5' -57.6 NC_005178.1 + 1392 0.75 0.128661
Target:  5'- aUACGUCUuGACCU--GGCCAGCAGGc -3'
miRNA:   3'- cAUGUAGGuCUGGGacCCGGUCGUCC- -5'
23096 5' -57.6 NC_005178.1 + 14607 0.76 0.093803
Target:  5'- -aGCAcCaCAGGCaCCUGGGCCAGCGGc -3'
miRNA:   3'- caUGUaG-GUCUG-GGACCCGGUCGUCc -5'
23096 5' -57.6 NC_005178.1 + 8894 1.1 0.000267
Target:  5'- gGUACAUCCAGACCCUGGGCCAGCAGGa -3'
miRNA:   3'- -CAUGUAGGUCUGGGACCCGGUCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.