miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23097 3' -56.7 NC_005178.1 + 6242 0.66 0.565664
Target:  5'- gCGGCGCC--AGGCG-C-AUAGcCCGGCg -3'
miRNA:   3'- -GCCGCGGcaUCUGCaGcUAUC-GGCUG- -5'
23097 3' -56.7 NC_005178.1 + 14228 0.66 0.554748
Target:  5'- gGGCGCCGgcaagGGccGCGUCuGGcaAGUCGGCa -3'
miRNA:   3'- gCCGCGGCa----UC--UGCAG-CUa-UCGGCUG- -5'
23097 3' -56.7 NC_005178.1 + 21042 0.66 0.554748
Target:  5'- gGGCGCgGcguGCGUCGAgguuGCCGGa -3'
miRNA:   3'- gCCGCGgCaucUGCAGCUau--CGGCUg -5'
23097 3' -56.7 NC_005178.1 + 2381 0.66 0.554748
Target:  5'- gCGGCcugGCCGacaguGACGUCcuccAGCCGGCu -3'
miRNA:   3'- -GCCG---CGGCau---CUGCAGcua-UCGGCUG- -5'
23097 3' -56.7 NC_005178.1 + 8313 0.66 0.554748
Target:  5'- cCGGCGCCGgccGAC-UCGuagaucguGCUGACu -3'
miRNA:   3'- -GCCGCGGCau-CUGcAGCuau-----CGGCUG- -5'
23097 3' -56.7 NC_005178.1 + 23523 0.66 0.554748
Target:  5'- gCGGCGCCGcaauGGCuUCGugcUGGCCGuCc -3'
miRNA:   3'- -GCCGCGGCau--CUGcAGCu--AUCGGCuG- -5'
23097 3' -56.7 NC_005178.1 + 29666 0.66 0.543894
Target:  5'- gGGCGCCGaGGACGU-GAUuGUgGAg -3'
miRNA:   3'- gCCGCGGCaUCUGCAgCUAuCGgCUg -5'
23097 3' -56.7 NC_005178.1 + 6781 0.66 0.537415
Target:  5'- aGGCGgaUGUccugguucagcuccaAGGCGUCGAUAuucggcgugauGCCGGCa -3'
miRNA:   3'- gCCGCg-GCA---------------UCUGCAGCUAU-----------CGGCUG- -5'
23097 3' -56.7 NC_005178.1 + 20682 0.66 0.533111
Target:  5'- aCGGCGCCaaGGACu----UGGCCGGCu -3'
miRNA:   3'- -GCCGCGGcaUCUGcagcuAUCGGCUG- -5'
23097 3' -56.7 NC_005178.1 + 36775 0.66 0.522405
Target:  5'- aGGUGgC-UAGGCugcUUGAUAGCCGGCg -3'
miRNA:   3'- gCCGCgGcAUCUGc--AGCUAUCGGCUG- -5'
23097 3' -56.7 NC_005178.1 + 4523 0.66 0.522405
Target:  5'- uCGGUGCCGcccaGGAUGUaaaGAUcgGGuCCGGCg -3'
miRNA:   3'- -GCCGCGGCa---UCUGCAg--CUA--UC-GGCUG- -5'
23097 3' -56.7 NC_005178.1 + 12639 0.66 0.522405
Target:  5'- aGGCcguGCUGUAcGGC-UCGGcGGCCGGCg -3'
miRNA:   3'- gCCG---CGGCAU-CUGcAGCUaUCGGCUG- -5'
23097 3' -56.7 NC_005178.1 + 17602 0.67 0.511783
Target:  5'- aCGGCgGCCGcUGuGCGUCGccGUGGuCUGACg -3'
miRNA:   3'- -GCCG-CGGC-AUcUGCAGC--UAUC-GGCUG- -5'
23097 3' -56.7 NC_005178.1 + 14819 0.67 0.511783
Target:  5'- uGGUGUUccaGGACGUCGAUGGCgcuaUGGCa -3'
miRNA:   3'- gCCGCGGca-UCUGCAGCUAUCG----GCUG- -5'
23097 3' -56.7 NC_005178.1 + 3073 0.67 0.501252
Target:  5'- uGGCGCUGcgcccCGUCGAUcuGGUCGAUg -3'
miRNA:   3'- gCCGCGGCaucu-GCAGCUA--UCGGCUG- -5'
23097 3' -56.7 NC_005178.1 + 7203 0.67 0.501252
Target:  5'- -cGCGCCGggAGACGuUCGuuguGUAGUCGAa -3'
miRNA:   3'- gcCGCGGCa-UCUGC-AGC----UAUCGGCUg -5'
23097 3' -56.7 NC_005178.1 + 8978 0.67 0.489779
Target:  5'- uGGCggggaauGCCGgcGACGccccCGGUGGCgCGGCg -3'
miRNA:   3'- gCCG-------CGGCauCUGCa---GCUAUCG-GCUG- -5'
23097 3' -56.7 NC_005178.1 + 23339 0.67 0.470258
Target:  5'- cCGGCGCCcUGGGggaaGUCcAUGGCCaGGCg -3'
miRNA:   3'- -GCCGCGGcAUCUg---CAGcUAUCGG-CUG- -5'
23097 3' -56.7 NC_005178.1 + 30563 0.68 0.430518
Target:  5'- -cGCGCCuGgcGAucCGUUGGUGGUCGGCa -3'
miRNA:   3'- gcCGCGG-CauCU--GCAGCUAUCGGCUG- -5'
23097 3' -56.7 NC_005178.1 + 23463 0.68 0.402041
Target:  5'- gGGCGCCc--GGCG-CGA-AGCCGGCc -3'
miRNA:   3'- gCCGCGGcauCUGCaGCUaUCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.