Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23097 | 3' | -56.7 | NC_005178.1 | + | 6242 | 0.66 | 0.565664 |
Target: 5'- gCGGCGCC--AGGCG-C-AUAGcCCGGCg -3' miRNA: 3'- -GCCGCGGcaUCUGCaGcUAUC-GGCUG- -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 8313 | 0.66 | 0.554748 |
Target: 5'- cCGGCGCCGgccGAC-UCGuagaucguGCUGACu -3' miRNA: 3'- -GCCGCGGCau-CUGcAGCuau-----CGGCUG- -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 2381 | 0.66 | 0.554748 |
Target: 5'- gCGGCcugGCCGacaguGACGUCcuccAGCCGGCu -3' miRNA: 3'- -GCCG---CGGCau---CUGCAGcua-UCGGCUG- -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 23523 | 0.66 | 0.554748 |
Target: 5'- gCGGCGCCGcaauGGCuUCGugcUGGCCGuCc -3' miRNA: 3'- -GCCGCGGCau--CUGcAGCu--AUCGGCuG- -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 21042 | 0.66 | 0.554748 |
Target: 5'- gGGCGCgGcguGCGUCGAgguuGCCGGa -3' miRNA: 3'- gCCGCGgCaucUGCAGCUau--CGGCUg -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 14228 | 0.66 | 0.554748 |
Target: 5'- gGGCGCCGgcaagGGccGCGUCuGGcaAGUCGGCa -3' miRNA: 3'- gCCGCGGCa----UC--UGCAG-CUa-UCGGCUG- -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 29666 | 0.66 | 0.543894 |
Target: 5'- gGGCGCCGaGGACGU-GAUuGUgGAg -3' miRNA: 3'- gCCGCGGCaUCUGCAgCUAuCGgCUg -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 6781 | 0.66 | 0.537415 |
Target: 5'- aGGCGgaUGUccugguucagcuccaAGGCGUCGAUAuucggcgugauGCCGGCa -3' miRNA: 3'- gCCGCg-GCA---------------UCUGCAGCUAU-----------CGGCUG- -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 20682 | 0.66 | 0.533111 |
Target: 5'- aCGGCGCCaaGGACu----UGGCCGGCu -3' miRNA: 3'- -GCCGCGGcaUCUGcagcuAUCGGCUG- -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 12639 | 0.66 | 0.522405 |
Target: 5'- aGGCcguGCUGUAcGGC-UCGGcGGCCGGCg -3' miRNA: 3'- gCCG---CGGCAU-CUGcAGCUaUCGGCUG- -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 36775 | 0.66 | 0.522405 |
Target: 5'- aGGUGgC-UAGGCugcUUGAUAGCCGGCg -3' miRNA: 3'- gCCGCgGcAUCUGc--AGCUAUCGGCUG- -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 4523 | 0.66 | 0.522405 |
Target: 5'- uCGGUGCCGcccaGGAUGUaaaGAUcgGGuCCGGCg -3' miRNA: 3'- -GCCGCGGCa---UCUGCAg--CUA--UC-GGCUG- -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 17602 | 0.67 | 0.511783 |
Target: 5'- aCGGCgGCCGcUGuGCGUCGccGUGGuCUGACg -3' miRNA: 3'- -GCCG-CGGC-AUcUGCAGC--UAUC-GGCUG- -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 14819 | 0.67 | 0.511783 |
Target: 5'- uGGUGUUccaGGACGUCGAUGGCgcuaUGGCa -3' miRNA: 3'- gCCGCGGca-UCUGCAGCUAUCG----GCUG- -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 7203 | 0.67 | 0.501252 |
Target: 5'- -cGCGCCGggAGACGuUCGuuguGUAGUCGAa -3' miRNA: 3'- gcCGCGGCa-UCUGC-AGC----UAUCGGCUg -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 3073 | 0.67 | 0.501252 |
Target: 5'- uGGCGCUGcgcccCGUCGAUcuGGUCGAUg -3' miRNA: 3'- gCCGCGGCaucu-GCAGCUA--UCGGCUG- -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 8978 | 0.67 | 0.489779 |
Target: 5'- uGGCggggaauGCCGgcGACGccccCGGUGGCgCGGCg -3' miRNA: 3'- gCCG-------CGGCauCUGCa---GCUAUCG-GCUG- -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 23339 | 0.67 | 0.470258 |
Target: 5'- cCGGCGCCcUGGGggaaGUCcAUGGCCaGGCg -3' miRNA: 3'- -GCCGCGGcAUCUg---CAGcUAUCGG-CUG- -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 30563 | 0.68 | 0.430518 |
Target: 5'- -cGCGCCuGgcGAucCGUUGGUGGUCGGCa -3' miRNA: 3'- gcCGCGG-CauCU--GCAGCUAUCGGCUG- -5' |
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23097 | 3' | -56.7 | NC_005178.1 | + | 23463 | 0.68 | 0.402041 |
Target: 5'- gGGCGCCc--GGCG-CGA-AGCCGGCc -3' miRNA: 3'- gCCGCGGcauCUGCaGCUaUCGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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