miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23097 5' -55.6 NC_005178.1 + 1439 0.66 0.531581
Target:  5'- -aGCCGGCccgCGcuauACCUGGuG-AGUGCa -3'
miRNA:   3'- aaCGGCCGaa-GC----UGGACCuCgUUACG- -5'
23097 5' -55.6 NC_005178.1 + 1926 0.69 0.351009
Target:  5'- gUGCC-GCUguaGACCUGGAGCGu--- -3'
miRNA:   3'- aACGGcCGAag-CUGGACCUCGUuacg -5'
23097 5' -55.6 NC_005178.1 + 1976 0.69 0.363425
Target:  5'- gUUGCCGaccgugguaucgauaGCUggUCGGCCUGGc-CAAUGCg -3'
miRNA:   3'- -AACGGC---------------CGA--AGCUGGACCucGUUACG- -5'
23097 5' -55.6 NC_005178.1 + 2164 0.66 0.565197
Target:  5'- --cUCGGCcugaUCGACgUGGAuugcaGCAGUGCg -3'
miRNA:   3'- aacGGCCGa---AGCUGgACCU-----CGUUACG- -5'
23097 5' -55.6 NC_005178.1 + 2995 0.68 0.425932
Target:  5'- cUGCCGaGCgugCGcaGCCUGGAGCGc--- -3'
miRNA:   3'- aACGGC-CGaa-GC--UGGACCUCGUuacg -5'
23097 5' -55.6 NC_005178.1 + 6098 0.7 0.3338
Target:  5'- -aGCCGGCcgccagCGGuuCCUGGAGCAGcUGg -3'
miRNA:   3'- aaCGGCCGaa----GCU--GGACCUCGUU-ACg -5'
23097 5' -55.6 NC_005178.1 + 6859 0.67 0.45638
Target:  5'- -gGaCCGcGCaaucgaucugUCGGCCUGGGGCGA-GCg -3'
miRNA:   3'- aaC-GGC-CGa---------AGCUGGACCUCGUUaCG- -5'
23097 5' -55.6 NC_005178.1 + 7887 0.71 0.271227
Target:  5'- gUGCgCGGCgccgaugCGGuCCUGGAGCuacUGCg -3'
miRNA:   3'- aACG-GCCGaa-----GCU-GGACCUCGuu-ACG- -5'
23097 5' -55.6 NC_005178.1 + 8987 0.66 0.531581
Target:  5'- aUGCCGGCgaCGcCCccGGuGGCGcgGCg -3'
miRNA:   3'- aACGGCCGaaGCuGGa-CC-UCGUuaCG- -5'
23097 5' -55.6 NC_005178.1 + 9028 1.08 0.000494
Target:  5'- gUUGCCGGCUUCGACCUGGAGCAAUGCc -3'
miRNA:   3'- -AACGGCCGAAGCUGGACCUCGUUACG- -5'
23097 5' -55.6 NC_005178.1 + 9315 0.68 0.396725
Target:  5'- -aGgCGGCagCGGCCUGGAuaGcgGCg -3'
miRNA:   3'- aaCgGCCGaaGCUGGACCUcgUuaCG- -5'
23097 5' -55.6 NC_005178.1 + 10247 0.72 0.237127
Target:  5'- -gGCCGGCgcgcugcugCG-CCUGGAGCuucUGCu -3'
miRNA:   3'- aaCGGCCGaa-------GCuGGACCUCGuu-ACG- -5'
23097 5' -55.6 NC_005178.1 + 11714 0.67 0.474145
Target:  5'- aUGCCGGCcaCGGCCaUGGcgucagacgugccgAGCAG-GCg -3'
miRNA:   3'- aACGGCCGaaGCUGG-ACC--------------UCGUUaCG- -5'
23097 5' -55.6 NC_005178.1 + 12155 0.66 0.542713
Target:  5'- -cGCCuaccGCgaCGuCCUGGAGCAGUcgGCg -3'
miRNA:   3'- aaCGGc---CGaaGCuGGACCUCGUUA--CG- -5'
23097 5' -55.6 NC_005178.1 + 12669 0.68 0.416054
Target:  5'- -cGCUGGCgggUGGCCUGGuugccuGCGGccUGCu -3'
miRNA:   3'- aaCGGCCGaa-GCUGGACCu-----CGUU--ACG- -5'
23097 5' -55.6 NC_005178.1 + 14090 0.68 0.425932
Target:  5'- -gGCCGGCUUCGcGCCgGGcGCccugGCc -3'
miRNA:   3'- aaCGGCCGAAGC-UGGaCCuCGuua-CG- -5'
23097 5' -55.6 NC_005178.1 + 14357 0.68 0.416054
Target:  5'- -gGUCGGCgaCGACCUGGAGa----- -3'
miRNA:   3'- aaCGGCCGaaGCUGGACCUCguuacg -5'
23097 5' -55.6 NC_005178.1 + 14764 0.68 0.416054
Target:  5'- -cGCCGuacuGCUcgaccaggUCGGCCUGGGuGCAAUaGCu -3'
miRNA:   3'- aaCGGC----CGA--------AGCUGGACCU-CGUUA-CG- -5'
23097 5' -55.6 NC_005178.1 + 14892 0.69 0.38728
Target:  5'- -cGCCcugGGCUUCGAUgaucGGAGCGuuGUGCu -3'
miRNA:   3'- aaCGG---CCGAAGCUGga--CCUCGU--UACG- -5'
23097 5' -55.6 NC_005178.1 + 15300 0.68 0.396725
Target:  5'- -aGCCuGGCggUCGGCUUGGcGGUAGuUGCg -3'
miRNA:   3'- aaCGG-CCGa-AGCUGGACC-UCGUU-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.