miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23097 5' -55.6 NC_005178.1 + 31768 0.78 0.089378
Target:  5'- aUGCCGGCgaCGACCUacagGGGGCGgccaGUGCu -3'
miRNA:   3'- aACGGCCGaaGCUGGA----CCUCGU----UACG- -5'
23097 5' -55.6 NC_005178.1 + 2164 0.66 0.565197
Target:  5'- --cUCGGCcugaUCGACgUGGAuugcaGCAGUGCg -3'
miRNA:   3'- aacGGCCGa---AGCUGgACCU-----CGUUACG- -5'
23097 5' -55.6 NC_005178.1 + 30805 0.66 0.553921
Target:  5'- -cG-CGGCcUCGACCUGG-GCcg-GCg -3'
miRNA:   3'- aaCgGCCGaAGCUGGACCuCGuuaCG- -5'
23097 5' -55.6 NC_005178.1 + 12155 0.66 0.542713
Target:  5'- -cGCCuaccGCgaCGuCCUGGAGCAGUcgGCg -3'
miRNA:   3'- aaCGGc---CGaaGCuGGACCUCGUUA--CG- -5'
23097 5' -55.6 NC_005178.1 + 1439 0.66 0.531581
Target:  5'- -aGCCGGCccgCGcuauACCUGGuG-AGUGCa -3'
miRNA:   3'- aaCGGCCGaa-GC----UGGACCuCgUUACG- -5'
23097 5' -55.6 NC_005178.1 + 33934 0.67 0.476258
Target:  5'- gUGCCGGCUUU--CC-GGGGCGuuaccacGUGCu -3'
miRNA:   3'- aACGGCCGAAGcuGGaCCUCGU-------UACG- -5'
23097 5' -55.6 NC_005178.1 + 29078 0.67 0.45638
Target:  5'- -gGCaCGGCgUUCaauCCUGGAGCAAUcccGCc -3'
miRNA:   3'- aaCG-GCCG-AAGcu-GGACCUCGUUA---CG- -5'
23097 5' -55.6 NC_005178.1 + 6859 0.67 0.45638
Target:  5'- -gGaCCGcGCaaucgaucugUCGGCCUGGGGCGA-GCg -3'
miRNA:   3'- aaC-GGC-CGa---------AGCUGGACCUCGUUaCG- -5'
23097 5' -55.6 NC_005178.1 + 2995 0.68 0.425932
Target:  5'- cUGCCGaGCgugCGcaGCCUGGAGCGc--- -3'
miRNA:   3'- aACGGC-CGaa-GC--UGGACCUCGUuacg -5'
23097 5' -55.6 NC_005178.1 + 12669 0.68 0.416054
Target:  5'- -cGCUGGCgggUGGCCUGGuugccuGCGGccUGCu -3'
miRNA:   3'- aaCGGCCGaa-GCUGGACCu-----CGUU--ACG- -5'
23097 5' -55.6 NC_005178.1 + 14357 0.68 0.416054
Target:  5'- -gGUCGGCgaCGACCUGGAGa----- -3'
miRNA:   3'- aaCGGCCGaaGCUGGACCUCguuacg -5'
23097 5' -55.6 NC_005178.1 + 19420 0.69 0.377984
Target:  5'- -aGCCGaGCUgcUCGGCCUcGGugacagGGUGAUGCg -3'
miRNA:   3'- aaCGGC-CGA--AGCUGGA-CC------UCGUUACG- -5'
23097 5' -55.6 NC_005178.1 + 28113 0.69 0.359847
Target:  5'- --uCCGGgUUUGGCCUGG-GCGGUGg -3'
miRNA:   3'- aacGGCCgAAGCUGGACCuCGUUACg -5'
23097 5' -55.6 NC_005178.1 + 31500 0.71 0.278503
Target:  5'- -gGCCGGCcUCGACUUccgcgacggcGGucuGGCGAUGCu -3'
miRNA:   3'- aaCGGCCGaAGCUGGA----------CC---UCGUUACG- -5'
23097 5' -55.6 NC_005178.1 + 7887 0.71 0.271227
Target:  5'- gUGCgCGGCgccgaugCGGuCCUGGAGCuacUGCg -3'
miRNA:   3'- aACG-GCCGaa-----GCU-GGACCUCGuu-ACG- -5'
23097 5' -55.6 NC_005178.1 + 9028 1.08 0.000494
Target:  5'- gUUGCCGGCUUCGACCUGGAGCAAUGCc -3'
miRNA:   3'- -AACGGCCGAAGCUGGACCUCGUUACG- -5'
23097 5' -55.6 NC_005178.1 + 21463 0.72 0.230753
Target:  5'- -cGCCaGGU--CGGCCgUGGAGUAGUGCu -3'
miRNA:   3'- aaCGG-CCGaaGCUGG-ACCUCGUUACG- -5'
23097 5' -55.6 NC_005178.1 + 10247 0.72 0.237127
Target:  5'- -gGCCGGCgcgcugcugCG-CCUGGAGCuucUGCu -3'
miRNA:   3'- aaCGGCCGaa-------GCuGGACCUCGuu-ACG- -5'
23097 5' -55.6 NC_005178.1 + 16595 0.71 0.271227
Target:  5'- -cGCCGGCgaaGACCUGGAcGUug-GCc -3'
miRNA:   3'- aaCGGCCGaagCUGGACCU-CGuuaCG- -5'
23097 5' -55.6 NC_005178.1 + 28984 0.7 0.301263
Target:  5'- -gGCCGGC-UCGGCCUGcGGCAu--- -3'
miRNA:   3'- aaCGGCCGaAGCUGGACcUCGUuacg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.