miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23099 5' -53 NC_005178.1 + 15196 0.66 0.721261
Target:  5'- cGCUGGuGAACgCGAAGccAGCAcGCCGGa-- -3'
miRNA:   3'- -CGACC-UUUG-GCUUC--UCGU-UGGCCguu -5'
23099 5' -53 NC_005178.1 + 18862 0.66 0.721261
Target:  5'- aGCUGGccguuucugaGGACCG-GGAGguACgGGCGc -3'
miRNA:   3'- -CGACC----------UUUGGCuUCUCguUGgCCGUu -5'
23099 5' -53 NC_005178.1 + 24219 0.66 0.721261
Target:  5'- aCUGGucaucACCGAcagcgcGAGCAGCCcGGCGc -3'
miRNA:   3'- cGACCuu---UGGCUu-----CUCGUUGG-CCGUu -5'
23099 5' -53 NC_005178.1 + 10625 0.66 0.709933
Target:  5'- cCUGGAuuucCUGAAGGGCA-UCGGUGAa -3'
miRNA:   3'- cGACCUuu--GGCUUCUCGUuGGCCGUU- -5'
23099 5' -53 NC_005178.1 + 14188 0.66 0.703094
Target:  5'- aGCUGGAGuucaauccgcGCCuGGccauggacuucccccAGGGC-GCCGGCAAg -3'
miRNA:   3'- -CGACCUU----------UGG-CU---------------UCUCGuUGGCCGUU- -5'
23099 5' -53 NC_005178.1 + 24052 0.66 0.698519
Target:  5'- cGCUGGGAACaggaGaAAGAGCGcuACCaGCu- -3'
miRNA:   3'- -CGACCUUUGg---C-UUCUCGU--UGGcCGuu -5'
23099 5' -53 NC_005178.1 + 30147 0.66 0.687033
Target:  5'- cGCUGGAAGCCcaucAGGuAGCcuuucuccaggAGCUGGCGGg -3'
miRNA:   3'- -CGACCUUUGGc---UUC-UCG-----------UUGGCCGUU- -5'
23099 5' -53 NC_005178.1 + 34610 0.66 0.687033
Target:  5'- aGCgGGAAAugcguCUGAAGA-CAACCGGCc- -3'
miRNA:   3'- -CGaCCUUU-----GGCUUCUcGUUGGCCGuu -5'
23099 5' -53 NC_005178.1 + 31941 0.66 0.675489
Target:  5'- gGCaUGG--GCCGAGccGAGCggUCGGCGu -3'
miRNA:   3'- -CG-ACCuuUGGCUU--CUCGuuGGCCGUu -5'
23099 5' -53 NC_005178.1 + 19556 0.66 0.663898
Target:  5'- aGCUGGgcACCcu-GGGCAGCC-GCAu -3'
miRNA:   3'- -CGACCuuUGGcuuCUCGUUGGcCGUu -5'
23099 5' -53 NC_005178.1 + 19695 0.66 0.663898
Target:  5'- cCUGGAccucGCCGAGG-GCGGCaGGCGc -3'
miRNA:   3'- cGACCUu---UGGCUUCuCGUUGgCCGUu -5'
23099 5' -53 NC_005178.1 + 20919 0.67 0.652274
Target:  5'- cGCUccaGGAcGCCGAGGucaucGGCGuGCCGGUAGc -3'
miRNA:   3'- -CGA---CCUuUGGCUUC-----UCGU-UGGCCGUU- -5'
23099 5' -53 NC_005178.1 + 9207 0.67 0.640629
Target:  5'- uGCUGGuGAUCGAAGA-CAACCaGCc- -3'
miRNA:   3'- -CGACCuUUGGCUUCUcGUUGGcCGuu -5'
23099 5' -53 NC_005178.1 + 33083 0.67 0.640629
Target:  5'- cGCUGGG---CG-GGAGCggUCGGCAGg -3'
miRNA:   3'- -CGACCUuugGCuUCUCGuuGGCCGUU- -5'
23099 5' -53 NC_005178.1 + 33574 0.67 0.640629
Target:  5'- gGCaucGAGGCCGAcgugcuGGucGCGACCGGCGAc -3'
miRNA:   3'- -CGac-CUUUGGCU------UCu-CGUUGGCCGUU- -5'
23099 5' -53 NC_005178.1 + 10334 0.67 0.628975
Target:  5'- cGCUGGAcuGGUCGAGGGGCGuagaCGGCc- -3'
miRNA:   3'- -CGACCU--UUGGCUUCUCGUug--GCCGuu -5'
23099 5' -53 NC_005178.1 + 32194 0.67 0.605689
Target:  5'- aGCUGGAcGCCGAcaccGAGCGuUUGGCc- -3'
miRNA:   3'- -CGACCUuUGGCUu---CUCGUuGGCCGuu -5'
23099 5' -53 NC_005178.1 + 10278 0.67 0.605689
Target:  5'- cGCUGGugGuaGucGAGCAGCuCGGCGg -3'
miRNA:   3'- -CGACCuuUggCuuCUCGUUG-GCCGUu -5'
23099 5' -53 NC_005178.1 + 16606 0.67 0.604527
Target:  5'- aGCUGGGcguccagguGCCGGucaacuggguccaGGAGCAGCUGGgAAu -3'
miRNA:   3'- -CGACCUu--------UGGCU-------------UCUCGUUGGCCgUU- -5'
23099 5' -53 NC_005178.1 + 16777 0.68 0.594078
Target:  5'- aGCUGGucAACCGAGGuaGGCAccgagguacGCCcGGCGc -3'
miRNA:   3'- -CGACCu-UUGGCUUC--UCGU---------UGG-CCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.