miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23099 5' -53 NC_005178.1 + 9207 0.67 0.640629
Target:  5'- uGCUGGuGAUCGAAGA-CAACCaGCc- -3'
miRNA:   3'- -CGACCuUUGGCUUCUcGUUGGcCGuu -5'
23099 5' -53 NC_005178.1 + 9962 1 0.004255
Target:  5'- gGCUGGAAACCGAAGAGC-ACCGGCAAg -3'
miRNA:   3'- -CGACCUUUGGCUUCUCGuUGGCCGUU- -5'
23099 5' -53 NC_005178.1 + 10278 0.67 0.605689
Target:  5'- cGCUGGugGuaGucGAGCAGCuCGGCGg -3'
miRNA:   3'- -CGACCuuUggCuuCUCGUUG-GCCGUu -5'
23099 5' -53 NC_005178.1 + 10334 0.67 0.628975
Target:  5'- cGCUGGAcuGGUCGAGGGGCGuagaCGGCc- -3'
miRNA:   3'- -CGACCU--UUGGCUUCUCGUug--GCCGuu -5'
23099 5' -53 NC_005178.1 + 10568 0.75 0.222372
Target:  5'- cGCUGGAuaugggagauugucAACCGGccGAGCgAGCCGGCAc -3'
miRNA:   3'- -CGACCU--------------UUGGCUu-CUCG-UUGGCCGUu -5'
23099 5' -53 NC_005178.1 + 10625 0.66 0.709933
Target:  5'- cCUGGAuuucCUGAAGGGCA-UCGGUGAa -3'
miRNA:   3'- cGACCUuu--GGCUUCUCGUuGGCCGUU- -5'
23099 5' -53 NC_005178.1 + 10833 0.7 0.439329
Target:  5'- uGCUGGAAGCCugcccGGuCAACUGGCAGc -3'
miRNA:   3'- -CGACCUUUGGcuuc-UC-GUUGGCCGUU- -5'
23099 5' -53 NC_005178.1 + 12866 0.69 0.503292
Target:  5'- aGC-GGAAGCCGAGGGGgaCGACUGGgAc -3'
miRNA:   3'- -CGaCCUUUGGCUUCUC--GUUGGCCgUu -5'
23099 5' -53 NC_005178.1 + 14046 0.68 0.570976
Target:  5'- --aGGAAcccaGCCGGucagugccuuGAGCAGCCGGCc- -3'
miRNA:   3'- cgaCCUU----UGGCUu---------CUCGUUGGCCGuu -5'
23099 5' -53 NC_005178.1 + 14188 0.66 0.703094
Target:  5'- aGCUGGAGuucaauccgcGCCuGGccauggacuucccccAGGGC-GCCGGCAAg -3'
miRNA:   3'- -CGACCUU----------UGG-CU---------------UCUCGuUGGCCGUU- -5'
23099 5' -53 NC_005178.1 + 15196 0.66 0.721261
Target:  5'- cGCUGGuGAACgCGAAGccAGCAcGCCGGa-- -3'
miRNA:   3'- -CGACC-UUUG-GCUUC--UCGU-UGGCCguu -5'
23099 5' -53 NC_005178.1 + 15929 0.71 0.380262
Target:  5'- aGCUG--AGCCGccGAGUAACCGGCc- -3'
miRNA:   3'- -CGACcuUUGGCuuCUCGUUGGCCGuu -5'
23099 5' -53 NC_005178.1 + 16606 0.67 0.604527
Target:  5'- aGCUGGGcguccagguGCCGGucaacuggguccaGGAGCAGCUGGgAAu -3'
miRNA:   3'- -CGACCUu--------UGGCU-------------UCUCGUUGGCCgUU- -5'
23099 5' -53 NC_005178.1 + 16777 0.68 0.594078
Target:  5'- aGCUGGucAACCGAGGuaGGCAccgagguacGCCcGGCGc -3'
miRNA:   3'- -CGACCu-UUGGCUUC--UCGU---------UGG-CCGUu -5'
23099 5' -53 NC_005178.1 + 17745 0.71 0.380262
Target:  5'- aGCUugGGGAGCUGGaaAGAGCAG-CGGCGAu -3'
miRNA:   3'- -CGA--CCUUUGGCU--UCUCGUUgGCCGUU- -5'
23099 5' -53 NC_005178.1 + 18333 0.7 0.460153
Target:  5'- aGCUGGuGGACCGcgagguccAGGAGCGcCUGGCGg -3'
miRNA:   3'- -CGACC-UUUGGC--------UUCUCGUuGGCCGUu -5'
23099 5' -53 NC_005178.1 + 18862 0.66 0.721261
Target:  5'- aGCUGGccguuucugaGGACCG-GGAGguACgGGCGc -3'
miRNA:   3'- -CGACC----------UUUGGCuUCUCguUGgCCGUu -5'
23099 5' -53 NC_005178.1 + 19556 0.66 0.663898
Target:  5'- aGCUGGgcACCcu-GGGCAGCC-GCAu -3'
miRNA:   3'- -CGACCuuUGGcuuCUCGUUGGcCGUu -5'
23099 5' -53 NC_005178.1 + 19695 0.66 0.663898
Target:  5'- cCUGGAccucGCCGAGG-GCGGCaGGCGc -3'
miRNA:   3'- cGACCUu---UGGCUUCuCGUUGgCCGUu -5'
23099 5' -53 NC_005178.1 + 20919 0.67 0.652274
Target:  5'- cGCUccaGGAcGCCGAGGucaucGGCGuGCCGGUAGc -3'
miRNA:   3'- -CGA---CCUuUGGCUUC-----UCGU-UGGCCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.