Results 21 - 39 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23099 | 5' | -53 | NC_005178.1 | + | 24052 | 0.66 | 0.698519 |
Target: 5'- cGCUGGGAACaggaGaAAGAGCGcuACCaGCu- -3' miRNA: 3'- -CGACCUUUGg---C-UUCUCGU--UGGcCGuu -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 24219 | 0.66 | 0.721261 |
Target: 5'- aCUGGucaucACCGAcagcgcGAGCAGCCcGGCGc -3' miRNA: 3'- cGACCuu---UGGCUu-----CUCGUUGG-CCGUu -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 28261 | 0.71 | 0.413083 |
Target: 5'- cGCUGGccGCCGccaauggugucaguGGGGUGACCGGCGc -3' miRNA: 3'- -CGACCuuUGGCu-------------UCUCGUUGGCCGUu -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 28319 | 0.68 | 0.570976 |
Target: 5'- cGCUGGAGugGCUGGuggcgGGAGUGGCUGGUu- -3' miRNA: 3'- -CGACCUU--UGGCU-----UCUCGUUGGCCGuu -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 28490 | 0.7 | 0.429121 |
Target: 5'- uCUGGAGGCCGGugaccgcGAGCGcgGCgCGGCAu -3' miRNA: 3'- cGACCUUUGGCUu------CUCGU--UG-GCCGUu -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 28547 | 0.7 | 0.456996 |
Target: 5'- gGC-GGggGCCGuccgccgcgccaccGGGGGCGucGCCGGCAu -3' miRNA: 3'- -CGaCCuuUGGC--------------UUCUCGU--UGGCCGUu -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 29346 | 0.75 | 0.224237 |
Target: 5'- cGCUGGu--CCGAcGuuAGCGACCGGCAc -3' miRNA: 3'- -CGACCuuuGGCUuC--UCGUUGGCCGUu -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 30147 | 0.66 | 0.687033 |
Target: 5'- cGCUGGAAGCCcaucAGGuAGCcuuucuccaggAGCUGGCGGg -3' miRNA: 3'- -CGACCUUUGGc---UUC-UCG-----------UUGGCCGUU- -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 31448 | 0.68 | 0.594078 |
Target: 5'- aGCUGcuccaGGAACCGcu-GGCGGCCGGCu- -3' miRNA: 3'- -CGAC-----CUUUGGCuucUCGUUGGCCGuu -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 31677 | 0.71 | 0.419054 |
Target: 5'- cGCUGGAcgaugggcGGCCGAGGgccgguguAGCGGCCuGGCu- -3' miRNA: 3'- -CGACCU--------UUGGCUUC--------UCGUUGG-CCGuu -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 31941 | 0.66 | 0.675489 |
Target: 5'- gGCaUGG--GCCGAGccGAGCggUCGGCGu -3' miRNA: 3'- -CG-ACCuuUGGCUU--CUCGuuGGCCGUu -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 32194 | 0.67 | 0.605689 |
Target: 5'- aGCUGGAcGCCGAcaccGAGCGuUUGGCc- -3' miRNA: 3'- -CGACCUuUGGCUu---CUCGUuGGCCGuu -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 33038 | 0.7 | 0.439329 |
Target: 5'- cCUGGGcggcACCGAGG-GCAuuCCGGCAGg -3' miRNA: 3'- cGACCUu---UGGCUUCuCGUu-GGCCGUU- -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 33083 | 0.67 | 0.640629 |
Target: 5'- cGCUGGG---CG-GGAGCggUCGGCAGg -3' miRNA: 3'- -CGACCUuugGCuUCUCGuuGGCCGUU- -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 33383 | 0.68 | 0.569826 |
Target: 5'- aGCUGGAuggugcuGACCGu-GGGCAACUaccgaacaaaGGCGAu -3' miRNA: 3'- -CGACCU-------UUGGCuuCUCGUUGG----------CCGUU- -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 33574 | 0.67 | 0.640629 |
Target: 5'- gGCaucGAGGCCGAcgugcuGGucGCGACCGGCGAc -3' miRNA: 3'- -CGac-CUUUGGCU------UCu-CGUUGGCCGUU- -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 34569 | 0.71 | 0.399357 |
Target: 5'- cCUGGGcgugccuACCGggGAGCuGGCCgGGCGAg -3' miRNA: 3'- cGACCUu------UGGCuuCUCG-UUGG-CCGUU- -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 34610 | 0.66 | 0.687033 |
Target: 5'- aGCgGGAAAugcguCUGAAGA-CAACCGGCc- -3' miRNA: 3'- -CGaCCUUU-----GGCUUCUcGUUGGCCGuu -5' |
|||||||
23099 | 5' | -53 | NC_005178.1 | + | 37189 | 0.7 | 0.469693 |
Target: 5'- cCUGGAGGCCGAGuuuGAcgccaucGCuACCGGCAc -3' miRNA: 3'- cGACCUUUGGCUU---CU-------CGuUGGCCGUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home