miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23099 5' -53 NC_005178.1 + 34610 0.66 0.687033
Target:  5'- aGCgGGAAAugcguCUGAAGA-CAACCGGCc- -3'
miRNA:   3'- -CGaCCUUU-----GGCUUCUcGUUGGCCGuu -5'
23099 5' -53 NC_005178.1 + 28319 0.68 0.570976
Target:  5'- cGCUGGAGugGCUGGuggcgGGAGUGGCUGGUu- -3'
miRNA:   3'- -CGACCUU--UGGCU-----UCUCGUUGGCCGuu -5'
23099 5' -53 NC_005178.1 + 31448 0.68 0.594078
Target:  5'- aGCUGcuccaGGAACCGcu-GGCGGCCGGCu- -3'
miRNA:   3'- -CGAC-----CUUUGGCuucUCGUUGGCCGuu -5'
23099 5' -53 NC_005178.1 + 16606 0.67 0.604527
Target:  5'- aGCUGGGcguccagguGCCGGucaacuggguccaGGAGCAGCUGGgAAu -3'
miRNA:   3'- -CGACCUu--------UGGCU-------------UCUCGUUGGCCgUU- -5'
23099 5' -53 NC_005178.1 + 32194 0.67 0.605689
Target:  5'- aGCUGGAcGCCGAcaccGAGCGuUUGGCc- -3'
miRNA:   3'- -CGACCUuUGGCUu---CUCGUuGGCCGuu -5'
23099 5' -53 NC_005178.1 + 10278 0.67 0.605689
Target:  5'- cGCUGGugGuaGucGAGCAGCuCGGCGg -3'
miRNA:   3'- -CGACCuuUggCuuCUCGUUG-GCCGUu -5'
23099 5' -53 NC_005178.1 + 33574 0.67 0.640629
Target:  5'- gGCaucGAGGCCGAcgugcuGGucGCGACCGGCGAc -3'
miRNA:   3'- -CGac-CUUUGGCU------UCu-CGUUGGCCGUU- -5'
23099 5' -53 NC_005178.1 + 20919 0.67 0.652274
Target:  5'- cGCUccaGGAcGCCGAGGucaucGGCGuGCCGGUAGc -3'
miRNA:   3'- -CGA---CCUuUGGCUUC-----UCGU-UGGCCGUU- -5'
23099 5' -53 NC_005178.1 + 31941 0.66 0.675489
Target:  5'- gGCaUGG--GCCGAGccGAGCggUCGGCGu -3'
miRNA:   3'- -CG-ACCuuUGGCUU--CUCGuuGGCCGUu -5'
23099 5' -53 NC_005178.1 + 33383 0.68 0.569826
Target:  5'- aGCUGGAuggugcuGACCGu-GGGCAACUaccgaacaaaGGCGAu -3'
miRNA:   3'- -CGACCU-------UUGGCuuCUCGUUGG----------CCGUU- -5'
23099 5' -53 NC_005178.1 + 12866 0.69 0.503292
Target:  5'- aGC-GGAAGCCGAGGGGgaCGACUGGgAc -3'
miRNA:   3'- -CGaCCUUUGGCUUCUC--GUUGGCCgUu -5'
23099 5' -53 NC_005178.1 + 37189 0.7 0.469693
Target:  5'- cCUGGAGGCCGAGuuuGAcgccaucGCuACCGGCAc -3'
miRNA:   3'- cGACCUUUGGCUU---CU-------CGuUGGCCGUu -5'
23099 5' -53 NC_005178.1 + 10568 0.75 0.222372
Target:  5'- cGCUGGAuaugggagauugucAACCGGccGAGCgAGCCGGCAc -3'
miRNA:   3'- -CGACCU--------------UUGGCUu-CUCG-UUGGCCGUu -5'
23099 5' -53 NC_005178.1 + 29346 0.75 0.224237
Target:  5'- cGCUGGu--CCGAcGuuAGCGACCGGCAc -3'
miRNA:   3'- -CGACCuuuGGCUuC--UCGUUGGCCGUu -5'
23099 5' -53 NC_005178.1 + 34569 0.71 0.399357
Target:  5'- cCUGGGcgugccuACCGggGAGCuGGCCgGGCGAg -3'
miRNA:   3'- cGACCUu------UGGCuuCUCG-UUGG-CCGUU- -5'
23099 5' -53 NC_005178.1 + 28261 0.71 0.413083
Target:  5'- cGCUGGccGCCGccaauggugucaguGGGGUGACCGGCGc -3'
miRNA:   3'- -CGACCuuUGGCu-------------UCUCGUUGGCCGUu -5'
23099 5' -53 NC_005178.1 + 10833 0.7 0.439329
Target:  5'- uGCUGGAAGCCugcccGGuCAACUGGCAGc -3'
miRNA:   3'- -CGACCUUUGGcuuc-UC-GUUGGCCGUU- -5'
23099 5' -53 NC_005178.1 + 33038 0.7 0.439329
Target:  5'- cCUGGGcggcACCGAGG-GCAuuCCGGCAGg -3'
miRNA:   3'- cGACCUu---UGGCUUCuCGUu-GGCCGUU- -5'
23099 5' -53 NC_005178.1 + 28547 0.7 0.456996
Target:  5'- gGC-GGggGCCGuccgccgcgccaccGGGGGCGucGCCGGCAu -3'
miRNA:   3'- -CGaCCuuUGGC--------------UUCUCGU--UGGCCGUu -5'
23099 5' -53 NC_005178.1 + 18333 0.7 0.460153
Target:  5'- aGCUGGuGGACCGcgagguccAGGAGCGcCUGGCGg -3'
miRNA:   3'- -CGACC-UUUGGC--------UUCUCGUuGGCCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.