Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23099 | 5' | -53 | NC_005178.1 | + | 17745 | 0.71 | 0.380262 |
Target: 5'- aGCUugGGGAGCUGGaaAGAGCAG-CGGCGAu -3' miRNA: 3'- -CGA--CCUUUGGCU--UCUCGUUgGCCGUU- -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 30147 | 0.66 | 0.687033 |
Target: 5'- cGCUGGAAGCCcaucAGGuAGCcuuucuccaggAGCUGGCGGg -3' miRNA: 3'- -CGACCUUUGGc---UUC-UCG-----------UUGGCCGUU- -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 33083 | 0.67 | 0.640629 |
Target: 5'- cGCUGGG---CG-GGAGCggUCGGCAGg -3' miRNA: 3'- -CGACCUuugGCuUCUCGuuGGCCGUU- -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 9207 | 0.67 | 0.640629 |
Target: 5'- uGCUGGuGAUCGAAGA-CAACCaGCc- -3' miRNA: 3'- -CGACCuUUGGCUUCUcGUUGGcCGuu -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 16777 | 0.68 | 0.594078 |
Target: 5'- aGCUGGucAACCGAGGuaGGCAccgagguacGCCcGGCGc -3' miRNA: 3'- -CGACCu-UUGGCUUC--UCGU---------UGG-CCGUu -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 14046 | 0.68 | 0.570976 |
Target: 5'- --aGGAAcccaGCCGGucagugccuuGAGCAGCCGGCc- -3' miRNA: 3'- cgaCCUU----UGGCUu---------CUCGUUGGCCGuu -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 10625 | 0.66 | 0.709933 |
Target: 5'- cCUGGAuuucCUGAAGGGCA-UCGGUGAa -3' miRNA: 3'- cGACCUuu--GGCUUCUCGUuGGCCGUU- -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 19695 | 0.66 | 0.663898 |
Target: 5'- cCUGGAccucGCCGAGG-GCGGCaGGCGc -3' miRNA: 3'- cGACCUu---UGGCUUCuCGUUGgCCGUu -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 10334 | 0.67 | 0.628975 |
Target: 5'- cGCUGGAcuGGUCGAGGGGCGuagaCGGCc- -3' miRNA: 3'- -CGACCU--UUGGCUUCUCGUug--GCCGuu -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 28490 | 0.7 | 0.429121 |
Target: 5'- uCUGGAGGCCGGugaccgcGAGCGcgGCgCGGCAu -3' miRNA: 3'- cGACCUUUGGCUu------CUCGU--UG-GCCGUu -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 15929 | 0.71 | 0.380262 |
Target: 5'- aGCUG--AGCCGccGAGUAACCGGCc- -3' miRNA: 3'- -CGACcuUUGGCuuCUCGUUGGCCGuu -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 18862 | 0.66 | 0.721261 |
Target: 5'- aGCUGGccguuucugaGGACCG-GGAGguACgGGCGc -3' miRNA: 3'- -CGACC----------UUUGGCuUCUCguUGgCCGUu -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 31677 | 0.71 | 0.419054 |
Target: 5'- cGCUGGAcgaugggcGGCCGAGGgccgguguAGCGGCCuGGCu- -3' miRNA: 3'- -CGACCU--------UUGGCUUC--------UCGUUGG-CCGuu -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 19556 | 0.66 | 0.663898 |
Target: 5'- aGCUGGgcACCcu-GGGCAGCC-GCAu -3' miRNA: 3'- -CGACCuuUGGcuuCUCGUUGGcCGUu -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 15196 | 0.66 | 0.721261 |
Target: 5'- cGCUGGuGAACgCGAAGccAGCAcGCCGGa-- -3' miRNA: 3'- -CGACC-UUUG-GCUUC--UCGU-UGGCCguu -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 24052 | 0.66 | 0.698519 |
Target: 5'- cGCUGGGAACaggaGaAAGAGCGcuACCaGCu- -3' miRNA: 3'- -CGACCUUUGg---C-UUCUCGU--UGGcCGuu -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 16606 | 0.67 | 0.604527 |
Target: 5'- aGCUGGGcguccagguGCCGGucaacuggguccaGGAGCAGCUGGgAAu -3' miRNA: 3'- -CGACCUu--------UGGCU-------------UCUCGUUGGCCgUU- -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 31448 | 0.68 | 0.594078 |
Target: 5'- aGCUGcuccaGGAACCGcu-GGCGGCCGGCu- -3' miRNA: 3'- -CGAC-----CUUUGGCuucUCGUUGGCCGuu -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 28319 | 0.68 | 0.570976 |
Target: 5'- cGCUGGAGugGCUGGuggcgGGAGUGGCUGGUu- -3' miRNA: 3'- -CGACCUU--UGGCU-----UCUCGUUGGCCGuu -5' |
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23099 | 5' | -53 | NC_005178.1 | + | 33383 | 0.68 | 0.569826 |
Target: 5'- aGCUGGAuggugcuGACCGu-GGGCAACUaccgaacaaaGGCGAu -3' miRNA: 3'- -CGACCU-------UUGGCuuCUCGUUGG----------CCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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