miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
231 5' -57 AC_000008.1 + 5345 0.66 0.484913
Target:  5'- gUGCgcuccgGGCUGCGCGCuGGCCa- -3'
miRNA:   3'- -ACGaacuaaCCGGCGUGCGcCUGGag -5'
231 5' -57 AC_000008.1 + 10010 0.66 0.443694
Target:  5'- gGCggcgGAguUUGGCCGUAgGUGGcgcCCUCu -3'
miRNA:   3'- aCGaa--CU--AACCGGCGUgCGCCu--GGAG- -5'
231 5' -57 AC_000008.1 + 21965 0.68 0.367602
Target:  5'- gUGCcuUUGAcgacgggUGGgCGgGCGCGGGCCUg -3'
miRNA:   3'- -ACG--AACUa------ACCgGCgUGCGCCUGGAg -5'
231 5' -57 AC_000008.1 + 25428 0.68 0.341472
Target:  5'- cGCUccg-UGGCCGCGCaccugGCGGACaUCa -3'
miRNA:   3'- aCGAacuaACCGGCGUG-----CGCCUGgAG- -5'
231 5' -57 AC_000008.1 + 27579 0.69 0.316711
Target:  5'- aGCUccGAcc-GCCGCGCGCGGACaUCu -3'
miRNA:   3'- aCGAa-CUaacCGGCGUGCGCCUGgAG- -5'
231 5' -57 AC_000008.1 + 17245 0.7 0.285839
Target:  5'- gGCUacg--GGCCGCAacgauCGCGGACCg- -3'
miRNA:   3'- aCGAacuaaCCGGCGU-----GCGCCUGGag -5'
231 5' -57 AC_000008.1 + 18760 1.1 0.00028
Target:  5'- cUGCUUGAUUGGCCGCACGCGGACCUCg -3'
miRNA:   3'- -ACGAACUAACCGGCGUGCGCCUGGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.