Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23100 | 3' | -57.7 | NC_005178.1 | + | 27294 | 0.66 | 0.500156 |
Target: 5'- ----aGCGUGGCcGGCAGGCCgaugcGUCCGg -3' miRNA: 3'- ccgaaCGCACUGcCCGUUUGG-----CGGGC- -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 1687 | 0.66 | 0.488734 |
Target: 5'- uGGCUggucgaugUGCGUGGCGgccgcguGGCuuACgGCCgCGa -3' miRNA: 3'- -CCGA--------ACGCACUGC-------CCGuuUGgCGG-GC- -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 22486 | 0.66 | 0.469301 |
Target: 5'- cGGCg-GCGa---GGGUGAGCCGUCCGc -3' miRNA: 3'- -CCGaaCGCacugCCCGUUUGGCGGGC- -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 22417 | 0.66 | 0.468289 |
Target: 5'- cGGCgugugGUGUGAucgcuCGGGCAgguacugGACaGCCCGc -3' miRNA: 3'- -CCGaa---CGCACU-----GCCCGU-------UUGgCGGGC- -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 26597 | 0.66 | 0.459233 |
Target: 5'- cGGUgacGCGgggGGCaggaGGCGGGCCGCgCCGg -3' miRNA: 3'- -CCGaa-CGCa--CUGc---CCGUUUGGCG-GGC- -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 20071 | 0.67 | 0.449281 |
Target: 5'- aGGCUccgGCcUGugGgGGCGugucgaauacACCGCCCGc -3' miRNA: 3'- -CCGAa--CGcACugC-CCGUu---------UGGCGGGC- -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 10428 | 0.67 | 0.439449 |
Target: 5'- cGGCcgcagGCGUucgucguuCGGGUuAGCCGCCUGg -3' miRNA: 3'- -CCGaa---CGCAcu------GCCCGuUUGGCGGGC- -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 30824 | 0.67 | 0.436524 |
Target: 5'- uGCUcgGCGcaUGGCGGcaccuccuggcucaGCAGugagGCCGCCCGg -3' miRNA: 3'- cCGAa-CGC--ACUGCC--------------CGUU----UGGCGGGC- -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 21982 | 0.67 | 0.435551 |
Target: 5'- aGCUgguaGUG-GACGGGCGuaucgaguccgacACCGCCUGg -3' miRNA: 3'- cCGAa---CGCaCUGCCCGUu------------UGGCGGGC- -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 21117 | 0.67 | 0.41071 |
Target: 5'- cGGCgaGC-UGGCGGGCAu-CCGCagCCa -3' miRNA: 3'- -CCGaaCGcACUGCCCGUuuGGCG--GGc -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 12059 | 0.67 | 0.401393 |
Target: 5'- uGGCUgcccGCGUGGCGGuGUucauCCGaUCCGa -3' miRNA: 3'- -CCGAa---CGCACUGCC-CGuuu-GGC-GGGC- -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 8769 | 0.68 | 0.392211 |
Target: 5'- uGGCcaGCGUG-CGGGCGgcggucuuugcAACCGCUg- -3' miRNA: 3'- -CCGaaCGCACuGCCCGU-----------UUGGCGGgc -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 15955 | 0.68 | 0.392211 |
Target: 5'- cGCUUGCGcGauaaagcaucGCGGGCGAgguacuccaGCCGUUCGg -3' miRNA: 3'- cCGAACGCaC----------UGCCCGUU---------UGGCGGGC- -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 1511 | 0.68 | 0.374264 |
Target: 5'- aGGCUUGCGaccuUGACcguuacgaGGUc-GCCGCCCGc -3' miRNA: 3'- -CCGAACGC----ACUGc-------CCGuuUGGCGGGC- -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 28528 | 0.68 | 0.374264 |
Target: 5'- gGGCg-GCGcuacaUGACuGGGCGggGGCCGUCCGc -3' miRNA: 3'- -CCGaaCGC-----ACUG-CCCGU--UUGGCGGGC- -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 16532 | 0.69 | 0.331886 |
Target: 5'- aGGUcagGCcgGUGGCGGuGCu-GCCGCCCa -3' miRNA: 3'- -CCGaa-CG--CACUGCC-CGuuUGGCGGGc -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 33015 | 0.69 | 0.315169 |
Target: 5'- gGGCg-GCGUccggcucGAUGGGCAGgccggagcguuGCCGCUCGg -3' miRNA: 3'- -CCGaaCGCA-------CUGCCCGUU-----------UGGCGGGC- -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 9880 | 0.7 | 0.293142 |
Target: 5'- cGCUcGCGUcGCGGGC-GugCGCUCGg -3' miRNA: 3'- cCGAaCGCAcUGCCCGuUugGCGGGC- -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 2894 | 0.7 | 0.293142 |
Target: 5'- aGGCUacggGCGcGGCGGuCGAACaCGCCCu -3' miRNA: 3'- -CCGAa---CGCaCUGCCcGUUUG-GCGGGc -5' |
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23100 | 3' | -57.7 | NC_005178.1 | + | 8991 | 0.7 | 0.293142 |
Target: 5'- cGGCgacGCccccgGUGGCGcGGCGGACgGCCCc -3' miRNA: 3'- -CCGaa-CG-----CACUGC-CCGUUUGgCGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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