miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23100 5' -51.7 NC_005178.1 + 25988 0.66 0.770202
Target:  5'- uGCGGgagCUGGCCCuGCCAGUuguuGCg- -3'
miRNA:   3'- uCGCUa--GAUCGGG-CGGUUAugu-UGaa -5'
23100 5' -51.7 NC_005178.1 + 8734 0.66 0.759241
Target:  5'- aGGCGAgggCUAcuucGCCCuuGCCGuggGCGACUUg -3'
miRNA:   3'- -UCGCUa--GAU----CGGG--CGGUua-UGUUGAA- -5'
23100 5' -51.7 NC_005178.1 + 32639 0.66 0.725511
Target:  5'- cGGCGAUCUGGUCgGCCAu-------- -3'
miRNA:   3'- -UCGCUAGAUCGGgCGGUuauguugaa -5'
23100 5' -51.7 NC_005178.1 + 1126 0.67 0.714033
Target:  5'- cGCGGcaaUAGCCCGCCAAcUGgGugUUa -3'
miRNA:   3'- uCGCUag-AUCGGGCGGUU-AUgUugAA- -5'
23100 5' -51.7 NC_005178.1 + 16997 0.67 0.69081
Target:  5'- cGCGAcCUGGCCCuggaGCUGGgugACAGCUUc -3'
miRNA:   3'- uCGCUaGAUCGGG----CGGUUa--UGUUGAA- -5'
23100 5' -51.7 NC_005178.1 + 17539 0.68 0.620001
Target:  5'- -cCGAUCUGGCagcacaucaugCCGCCGAauggcUACAACUg -3'
miRNA:   3'- ucGCUAGAUCG-----------GGCGGUU-----AUGUUGAa -5'
23100 5' -51.7 NC_005178.1 + 22267 0.69 0.561196
Target:  5'- cGCcaggCUGGCCCGCCAG-GCGGCg- -3'
miRNA:   3'- uCGcua-GAUCGGGCGGUUaUGUUGaa -5'
23100 5' -51.7 NC_005178.1 + 19 0.7 0.526621
Target:  5'- gAGCGGUC-AGCuuGCCGAUGCc---- -3'
miRNA:   3'- -UCGCUAGaUCGggCGGUUAUGuugaa -5'
23100 5' -51.7 NC_005178.1 + 22870 0.71 0.428626
Target:  5'- cGGCGGUCgUGGCCCaggcuaucGCCGAUGCGgACg- -3'
miRNA:   3'- -UCGCUAG-AUCGGG--------CGGUUAUGU-UGaa -5'
23100 5' -51.7 NC_005178.1 + 13006 0.74 0.291997
Target:  5'- cGCGGacaUCaAGCCCGCCGugaagGUGCAGCUg -3'
miRNA:   3'- uCGCU---AGaUCGGGCGGU-----UAUGUUGAa -5'
23100 5' -51.7 NC_005178.1 + 10534 1.06 0.0017
Target:  5'- cAGCGAUCUAGCCCGCCAAUACAACUUg -3'
miRNA:   3'- -UCGCUAGAUCGGGCGGUUAUGUUGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.