miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23101 5' -62.1 NC_005178.1 + 32229 0.66 0.322664
Target:  5'- gCCGCccugggCCGCCuggUCGaGCCGaccgauGUAGCGCg -3'
miRNA:   3'- gGGCGua----GGUGG---AGC-CGGC------CGUCGCG- -5'
23101 5' -62.1 NC_005178.1 + 14335 0.66 0.322664
Target:  5'- gCCCGCAccgUCCugACCUggUGGUCGGCGaCGa -3'
miRNA:   3'- -GGGCGU---AGG--UGGA--GCCGGCCGUcGCg -5'
23101 5' -62.1 NC_005178.1 + 28311 0.66 0.322664
Target:  5'- gCCGgGgCCGCUggagUGGCUGGUGGCGg -3'
miRNA:   3'- gGGCgUaGGUGGa---GCCGGCCGUCGCg -5'
23101 5' -62.1 NC_005178.1 + 2443 0.66 0.322664
Target:  5'- aCCGg--CCGCCagCGGCagcuCGGCGGCGa -3'
miRNA:   3'- gGGCguaGGUGGa-GCCG----GCCGUCGCg -5'
23101 5' -62.1 NC_005178.1 + 5632 0.66 0.321894
Target:  5'- gCCG-AUCCAgCgauGGCCgaugaccGGCAGCGCc -3'
miRNA:   3'- gGGCgUAGGUgGag-CCGG-------CCGUCGCG- -5'
23101 5' -62.1 NC_005178.1 + 30560 0.66 0.315033
Target:  5'- cCUCGCG-CCuggcgauCCguuggUGGUCGGCAGCGa -3'
miRNA:   3'- -GGGCGUaGGu------GGa----GCCGGCCGUCGCg -5'
23101 5' -62.1 NC_005178.1 + 20383 0.66 0.315033
Target:  5'- uCCagGCGUgaCGCCUUGGCCaccGuCAGCGCu -3'
miRNA:   3'- -GGg-CGUAg-GUGGAGCCGGc--C-GUCGCG- -5'
23101 5' -62.1 NC_005178.1 + 14610 0.66 0.315033
Target:  5'- aCCaCAggCACCUgGGCCaGCGGCaGCu -3'
miRNA:   3'- gGGcGUagGUGGAgCCGGcCGUCG-CG- -5'
23101 5' -62.1 NC_005178.1 + 20026 0.66 0.31052
Target:  5'- gCCCGCGcCCGCUgcCGGCCGuUuccuggacuucgaauGGCGCg -3'
miRNA:   3'- -GGGCGUaGGUGGa-GCCGGCcG---------------UCGCG- -5'
23101 5' -62.1 NC_005178.1 + 19676 0.66 0.31052
Target:  5'- aCCGgGUCCaggagcacguccuggACCUCgccgaGGgCGGCAGgCGCu -3'
miRNA:   3'- gGGCgUAGG---------------UGGAG-----CCgGCCGUC-GCG- -5'
23101 5' -62.1 NC_005178.1 + 26157 0.66 0.30754
Target:  5'- gCCGCAccgaucagCCACCa-GGCgGGCAGaccgGCa -3'
miRNA:   3'- gGGCGUa-------GGUGGagCCGgCCGUCg---CG- -5'
23101 5' -62.1 NC_005178.1 + 28113 0.66 0.30754
Target:  5'- uCCgGguUUgGCCUgGGCgguggcaccgaUGGCGGCGCc -3'
miRNA:   3'- -GGgCguAGgUGGAgCCG-----------GCCGUCGCG- -5'
23101 5' -62.1 NC_005178.1 + 34699 0.66 0.30754
Target:  5'- uUCCGCAUCCguucgACC-CGGCgCGGCAu--- -3'
miRNA:   3'- -GGGCGUAGG-----UGGaGCCG-GCCGUcgcg -5'
23101 5' -62.1 NC_005178.1 + 8798 0.66 0.306798
Target:  5'- aCCGCugagCCGCaccaGGUCGGCAagaaagucgcccgGCGCg -3'
miRNA:   3'- gGGCGua--GGUGgag-CCGGCCGU-------------CGCG- -5'
23101 5' -62.1 NC_005178.1 + 11371 0.66 0.306057
Target:  5'- gCCCGCAgcggCCACCgcCGcGCCGaugaugauaaaGGCGCu -3'
miRNA:   3'- -GGGCGUa---GGUGGa-GC-CGGCcg---------UCGCG- -5'
23101 5' -62.1 NC_005178.1 + 1548 0.66 0.300183
Target:  5'- --aGUGUCgC-CCUCGGCCuggccggaagucGGCAGCGUu -3'
miRNA:   3'- gggCGUAG-GuGGAGCCGG------------CCGUCGCG- -5'
23101 5' -62.1 NC_005178.1 + 3424 0.66 0.298003
Target:  5'- aCCCGUcgaauuccgggaugGUCCACCggccuggccgagUCGGCCcuGGUGGUGg -3'
miRNA:   3'- -GGGCG--------------UAGGUGG------------AGCCGG--CCGUCGCg -5'
23101 5' -62.1 NC_005178.1 + 30472 0.66 0.295835
Target:  5'- aCCGaggucaCCGCCUCgcccagGGCCGGgcacucaaugcggcuCAGCGCg -3'
miRNA:   3'- gGGCgua---GGUGGAG------CCGGCC---------------GUCGCG- -5'
23101 5' -62.1 NC_005178.1 + 2271 0.66 0.292963
Target:  5'- cCCCGg--CCAgaugCUUGGCCGGUacgguaucGGCGCa -3'
miRNA:   3'- -GGGCguaGGUg---GAGCCGGCCG--------UCGCG- -5'
23101 5' -62.1 NC_005178.1 + 16308 0.66 0.292963
Target:  5'- gUCCGguUCgaCGCCgaugaugCGGCCGGCcggggAGCGg -3'
miRNA:   3'- -GGGCguAG--GUGGa------GCCGGCCG-----UCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.