miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23102 3' -57.5 NC_005178.1 + 31044 0.67 0.434883
Target:  5'- cCGCAUGcgcACGGUggCgGCGgugaCCUGGCc -3'
miRNA:   3'- cGCGUAU---UGCCGuaGgCGCg---GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 18144 0.67 0.434883
Target:  5'- -aGCAgcuCGGC-UgCGCGCCgUUGGCu -3'
miRNA:   3'- cgCGUauuGCCGuAgGCGCGG-GACCG- -5'
23102 3' -57.5 NC_005178.1 + 14229 0.67 0.425181
Target:  5'- gGCGC----CGGCAagggCCGCG-UCUGGCa -3'
miRNA:   3'- -CGCGuauuGCCGUa---GGCGCgGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 3017 0.67 0.425181
Target:  5'- aGCGCuuccugGACcaGGCcgagcgUgGCGCCCUGGUg -3'
miRNA:   3'- -CGCGua----UUG--CCGua----GgCGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 7747 0.67 0.424218
Target:  5'- aGCGCcUGGCGGUccuccagggcggaGUCCa-GUCCUGGUg -3'
miRNA:   3'- -CGCGuAUUGCCG-------------UAGGcgCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 521 0.67 0.415609
Target:  5'- gGCGCcgu-CGGUccaggaaCCGUGCCCUGcGCu -3'
miRNA:   3'- -CGCGuauuGCCGua-----GGCGCGGGAC-CG- -5'
23102 3' -57.5 NC_005178.1 + 7509 0.67 0.415609
Target:  5'- aGCGCGUGAauggccCGGCGcugagCUGCGCUaUGGUu -3'
miRNA:   3'- -CGCGUAUU------GCCGUa----GGCGCGGgACCG- -5'
23102 3' -57.5 NC_005178.1 + 34733 0.67 0.415609
Target:  5'- cGUGCAgcacccccUGGCgGGCAUCgGCGaCCaguugCUGGCg -3'
miRNA:   3'- -CGCGU--------AUUG-CCGUAGgCGC-GG-----GACCG- -5'
23102 3' -57.5 NC_005178.1 + 31675 0.67 0.414659
Target:  5'- cGCGCuggacgAugGGCggCCgagggccgguguaGCGgCCUGGCu -3'
miRNA:   3'- -CGCGua----UugCCGuaGG-------------CGCgGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 10031 0.67 0.40617
Target:  5'- uGCGCAaAAU--CA-CCGCGCuCCUGGCc -3'
miRNA:   3'- -CGCGUaUUGccGUaGGCGCG-GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 33775 0.68 0.396867
Target:  5'- -aGaCAUcAGCGGCAUggugCCGC-CCUUGGCg -3'
miRNA:   3'- cgC-GUA-UUGCCGUA----GGCGcGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 23311 0.68 0.387702
Target:  5'- gGUGCcgAcuugccagacGCGGCccuugCCgGCGCCCUGGg -3'
miRNA:   3'- -CGCGuaU----------UGCCGua---GG-CGCGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 1831 0.68 0.387702
Target:  5'- gGCGCAcguccuggAGCGGacCAUCCGCcauGUCCUcGGCc -3'
miRNA:   3'- -CGCGUa-------UUGCC--GUAGGCG---CGGGA-CCG- -5'
23102 3' -57.5 NC_005178.1 + 27327 0.68 0.369795
Target:  5'- uCGCG-GACGGUAUCCGgcagcaUGUCCUGGa -3'
miRNA:   3'- cGCGUaUUGCCGUAGGC------GCGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 26181 0.68 0.361056
Target:  5'- gGCGCG--GCGGUggCCGCugcgggcgugGCgCUGGCu -3'
miRNA:   3'- -CGCGUauUGCCGuaGGCG----------CGgGACCG- -5'
23102 3' -57.5 NC_005178.1 + 33906 0.68 0.361056
Target:  5'- cGCGCcUGGCGGCGaugcUCgGCGgCCggugccGGCu -3'
miRNA:   3'- -CGCGuAUUGCCGU----AGgCGCgGGa-----CCG- -5'
23102 3' -57.5 NC_005178.1 + 1982 0.68 0.352462
Target:  5'- gGCGCGggaaccgcuGCaGCAgaggUCGCGgCCUGGCu -3'
miRNA:   3'- -CGCGUau-------UGcCGUa---GGCGCgGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 16368 0.69 0.335712
Target:  5'- aGCGagucgGGCGGCGgcgCCuaCGCCCUGGg -3'
miRNA:   3'- -CGCgua--UUGCCGUa--GGc-GCGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 16460 0.69 0.311692
Target:  5'- gGCGCAcacggacgaccuUGGCGcCAUCCGCGCCauuGCg -3'
miRNA:   3'- -CGCGU------------AUUGCcGUAGGCGCGGgacCG- -5'
23102 3' -57.5 NC_005178.1 + 20471 0.69 0.311692
Target:  5'- uGCGCuccagguacucaAUGGCGGCcUCCG-GCCgcaUGGCg -3'
miRNA:   3'- -CGCG------------UAUUGCCGuAGGCgCGGg--ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.