miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23102 3' -57.5 NC_005178.1 + 28008 0.69 0.310138
Target:  5'- cGCGCuucgcucguUGGCGUucCCGCGCCaggcggcgCUGGCg -3'
miRNA:   3'- -CGCGuauu-----GCCGUA--GGCGCGG--------GACCG- -5'
23102 3' -57.5 NC_005178.1 + 4288 0.7 0.267626
Target:  5'- -aGCGUGACGGCGgguaUGCCCUGGa -3'
miRNA:   3'- cgCGUAUUGCCGUaggcGCGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 12643 0.7 0.274605
Target:  5'- cGUGCuguACGGCucggcggCCgGCGCgCUGGCg -3'
miRNA:   3'- -CGCGuauUGCCGua-----GG-CGCGgGACCG- -5'
23102 3' -57.5 NC_005178.1 + 12706 0.7 0.296417
Target:  5'- gGCGCGUAucaagcuCGGUAUCUGagggguaGUCCaUGGCg -3'
miRNA:   3'- -CGCGUAUu------GCCGUAGGCg------CGGG-ACCG- -5'
23102 3' -57.5 NC_005178.1 + 16698 0.7 0.296417
Target:  5'- gGCGCA----GGCAUcgcccaacugagCCgGCGCCCUGGUc -3'
miRNA:   3'- -CGCGUauugCCGUA------------GG-CGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 26312 0.7 0.296417
Target:  5'- cGC-CAUGGCGGCGUCaCuCGCCagGGCg -3'
miRNA:   3'- -CGcGUAUUGCCGUAG-GcGCGGgaCCG- -5'
23102 3' -57.5 NC_005178.1 + 19165 0.7 0.28245
Target:  5'- cGCGCAUcAGCGGCAgggugucgguuacagCCGCGUagagugccgCCaGGCg -3'
miRNA:   3'- -CGCGUA-UUGCCGUa--------------GGCGCG---------GGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 14083 0.7 0.26079
Target:  5'- aGCaGCGggcCGGCuucgcgCCggGCGCCCUGGCc -3'
miRNA:   3'- -CG-CGUauuGCCGua----GG--CGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 20140 0.71 0.234865
Target:  5'- uCGUAUGcgGCGGCAUa-GCGCCC-GGCc -3'
miRNA:   3'- cGCGUAU--UGCCGUAggCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 34624 0.71 0.254097
Target:  5'- -aGCAUAGCGaGCAgCUGCGgcucgaCCUGGCc -3'
miRNA:   3'- cgCGUAUUGC-CGUaGGCGCg-----GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 30544 0.71 0.254097
Target:  5'- uGUGCAacAUGGCcuUCCuCGCgCCUGGCg -3'
miRNA:   3'- -CGCGUauUGCCGu-AGGcGCG-GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 17193 0.71 0.254097
Target:  5'- uGUGCucca-GGaCAUCCGCgacGCCCUGGUc -3'
miRNA:   3'- -CGCGuauugCC-GUAGGCG---CGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 11460 0.71 0.254097
Target:  5'- aCGCu--GCGGCAgcgUCCGC-CCCUcgGGCg -3'
miRNA:   3'- cGCGuauUGCCGU---AGGCGcGGGA--CCG- -5'
23102 3' -57.5 NC_005178.1 + 20013 0.72 0.205538
Target:  5'- -aGCAgAACGGCcagcCCGCGCCCgcugccGGCc -3'
miRNA:   3'- cgCGUaUUGCCGua--GGCGCGGGa-----CCG- -5'
23102 3' -57.5 NC_005178.1 + 23229 0.72 0.222733
Target:  5'- -gGUcgAGC-GCAUCCGCGCCgaGGUg -3'
miRNA:   3'- cgCGuaUUGcCGUAGGCGCGGgaCCG- -5'
23102 3' -57.5 NC_005178.1 + 21110 0.72 0.222733
Target:  5'- -aGCGUGGCGGCGagcuggcgggcaUCCGCaGCCaguaggucaUGGCg -3'
miRNA:   3'- cgCGUAUUGCCGU------------AGGCG-CGGg--------ACCG- -5'
23102 3' -57.5 NC_005178.1 + 17636 0.73 0.184409
Target:  5'- gGCgGCAcUGGCGGCAucgaUCCGCcaGCCC-GGCa -3'
miRNA:   3'- -CG-CGU-AUUGCCGU----AGGCG--CGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 16892 0.73 0.189504
Target:  5'- -gGCcgAGCuGC-UCgGCGCCCUGGCc -3'
miRNA:   3'- cgCGuaUUGcCGuAGgCGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 4233 0.74 0.139405
Target:  5'- cGCGCAga--GGCccgcgagAagCGCGCCCUGGCu -3'
miRNA:   3'- -CGCGUauugCCG-------UagGCGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 30829 0.74 0.14377
Target:  5'- gGCGCAUGGCGGCA-CC---UCCUGGCu -3'
miRNA:   3'- -CGCGUAUUGCCGUaGGcgcGGGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.