miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23102 3' -57.5 NC_005178.1 + 19953 0.66 0.485221
Target:  5'- cGCGCAcguCGcGCAagacUCCGCccGUCCUGGa -3'
miRNA:   3'- -CGCGUauuGC-CGU----AGGCG--CGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 20013 0.72 0.205538
Target:  5'- -aGCAgAACGGCcagcCCGCGCCCgcugccGGCc -3'
miRNA:   3'- cgCGUaUUGCCGua--GGCGCGGGa-----CCG- -5'
23102 3' -57.5 NC_005178.1 + 20140 0.71 0.234865
Target:  5'- uCGUAUGcgGCGGCAUa-GCGCCC-GGCc -3'
miRNA:   3'- cGCGUAU--UGCCGUAggCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 20471 0.69 0.311692
Target:  5'- uGCGCuccagguacucaAUGGCGGCcUCCG-GCCgcaUGGCg -3'
miRNA:   3'- -CGCG------------UAUUGCCGuAGGCgCGGg--ACCG- -5'
23102 3' -57.5 NC_005178.1 + 20944 0.66 0.454665
Target:  5'- cGUGCcgGUAGCGGCAacgUCCaggucuucgccgGCGCCaucgucgUGGCg -3'
miRNA:   3'- -CGCG--UAUUGCCGU---AGG------------CGCGGg------ACCG- -5'
23102 3' -57.5 NC_005178.1 + 21110 0.72 0.222733
Target:  5'- -aGCGUGGCGGCGagcuggcgggcaUCCGCaGCCaguaggucaUGGCg -3'
miRNA:   3'- cgCGUAUUGCCGU------------AGGCG-CGGg--------ACCG- -5'
23102 3' -57.5 NC_005178.1 + 22883 0.76 0.111472
Target:  5'- cGCGCcguccuccAUGGCGGCGg-CGCGCuCCUGGUa -3'
miRNA:   3'- -CGCG--------UAUUGCCGUagGCGCG-GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 22971 0.66 0.474924
Target:  5'- aGCGCGUAGCG-----UGCGUgCUGGCa -3'
miRNA:   3'- -CGCGUAUUGCcguagGCGCGgGACCG- -5'
23102 3' -57.5 NC_005178.1 + 23229 0.72 0.222733
Target:  5'- -gGUcgAGC-GCAUCCGCGCCgaGGUg -3'
miRNA:   3'- cgCGuaUUGcCGUAGGCGCGGgaCCG- -5'
23102 3' -57.5 NC_005178.1 + 23311 0.68 0.387702
Target:  5'- gGUGCcgAcuugccagacGCGGCccuugCCgGCGCCCUGGg -3'
miRNA:   3'- -CGCGuaU----------UGCCGua---GG-CGCGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 24419 0.66 0.485221
Target:  5'- uGCGCuAUAAgGGCAUCaa---CCUGGCc -3'
miRNA:   3'- -CGCG-UAUUgCCGUAGgcgcgGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 26181 0.68 0.361056
Target:  5'- gGCGCG--GCGGUggCCGCugcgggcgugGCgCUGGCu -3'
miRNA:   3'- -CGCGUauUGCCGuaGGCG----------CGgGACCG- -5'
23102 3' -57.5 NC_005178.1 + 26312 0.7 0.296417
Target:  5'- cGC-CAUGGCGGCGUCaCuCGCCagGGCg -3'
miRNA:   3'- -CGcGUAUUGCCGUAG-GcGCGGgaCCG- -5'
23102 3' -57.5 NC_005178.1 + 26904 0.66 0.485221
Target:  5'- gGCGCGgagacgcCGGCcggggcgUUGCGCCCcGGCu -3'
miRNA:   3'- -CGCGUauu----GCCGua-----GGCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 27210 0.78 0.072297
Target:  5'- aGCGCAgccCGGCGcgcuucgccccUCCGCGCCC-GGCc -3'
miRNA:   3'- -CGCGUauuGCCGU-----------AGGCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 27327 0.68 0.369795
Target:  5'- uCGCG-GACGGUAUCCGgcagcaUGUCCUGGa -3'
miRNA:   3'- cGCGUaUUGCCGUAGGC------GCGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 28008 0.69 0.310138
Target:  5'- cGCGCuucgcucguUGGCGUucCCGCGCCaggcggcgCUGGCg -3'
miRNA:   3'- -CGCGuauu-----GCCGUA--GGCGCGG--------GACCG- -5'
23102 3' -57.5 NC_005178.1 + 28167 0.75 0.124892
Target:  5'- gGCGCcu--CGGCuguAUCCgccucggccgGCGCCCUGGCg -3'
miRNA:   3'- -CGCGuauuGCCG---UAGG----------CGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 28532 0.66 0.506126
Target:  5'- gGCGCuacAUGACugGGCGggggccguccgCCGCGCCaccgggGGCg -3'
miRNA:   3'- -CGCG---UAUUG--CCGUa----------GGCGCGGga----CCG- -5'
23102 3' -57.5 NC_005178.1 + 30188 0.67 0.434883
Target:  5'- gGCGuCAUcuGCGGCgaugGUCaCGCGCCCcucugucGGCu -3'
miRNA:   3'- -CGC-GUAu-UGCCG----UAG-GCGCGGGa------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.