miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23102 3' -57.5 NC_005178.1 + 34733 0.67 0.415609
Target:  5'- cGUGCAgcacccccUGGCgGGCAUCgGCGaCCaguugCUGGCg -3'
miRNA:   3'- -CGCGU--------AUUG-CCGUAGgCGC-GG-----GACCG- -5'
23102 3' -57.5 NC_005178.1 + 7509 0.67 0.415609
Target:  5'- aGCGCGUGAauggccCGGCGcugagCUGCGCUaUGGUu -3'
miRNA:   3'- -CGCGUAUU------GCCGUa----GGCGCGGgACCG- -5'
23102 3' -57.5 NC_005178.1 + 18144 0.67 0.434883
Target:  5'- -aGCAgcuCGGC-UgCGCGCCgUUGGCu -3'
miRNA:   3'- cgCGUauuGCCGuAgGCGCGG-GACCG- -5'
23102 3' -57.5 NC_005178.1 + 30188 0.67 0.434883
Target:  5'- gGCGuCAUcuGCGGCgaugGUCaCGCGCCCcucugucGGCu -3'
miRNA:   3'- -CGC-GUAu-UGCCG----UAG-GCGCGGGa------CCG- -5'
23102 3' -57.5 NC_005178.1 + 31044 0.67 0.434883
Target:  5'- cCGCAUGcgcACGGUggCgGCGgugaCCUGGCc -3'
miRNA:   3'- cGCGUAU---UGCCGuaGgCGCg---GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 4636 0.67 0.444713
Target:  5'- -gGCAUAGcCGGCGaCCaCGCCgCUGGa -3'
miRNA:   3'- cgCGUAUU-GCCGUaGGcGCGG-GACCg -5'
23102 3' -57.5 NC_005178.1 + 3898 0.66 0.454665
Target:  5'- uGUGCcuucgguuUAGCGccCAUCCGCGaucuCCUGGCg -3'
miRNA:   3'- -CGCGu-------AUUGCc-GUAGGCGCg---GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 33015 0.66 0.454665
Target:  5'- -----gGGCGGCGUCCG-GCUCgaugGGCa -3'
miRNA:   3'- cgcguaUUGCCGUAGGCgCGGGa---CCG- -5'
23102 3' -57.5 NC_005178.1 + 15121 0.66 0.45868
Target:  5'- cGCGCAgcuggggcucuuccuUGAUGGCcuugagCUGCGCCUcagucagGGCg -3'
miRNA:   3'- -CGCGU---------------AUUGCCGua----GGCGCGGGa------CCG- -5'
23102 3' -57.5 NC_005178.1 + 2189 0.66 0.464737
Target:  5'- aGCaGCcgGGCcuggaGCGUCa-CGCCCUGGCu -3'
miRNA:   3'- -CG-CGuaUUGc----CGUAGgcGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 11669 0.66 0.464737
Target:  5'- uGCGC----CGGCAacugCCGCauGgCCUGGCg -3'
miRNA:   3'- -CGCGuauuGCCGUa---GGCG--CgGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 32754 0.66 0.464737
Target:  5'- gGCGCG--GCGGCgAUUgGCGaUCCaGGCg -3'
miRNA:   3'- -CGCGUauUGCCG-UAGgCGC-GGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 26904 0.66 0.485221
Target:  5'- gGCGCGgagacgcCGGCcggggcgUUGCGCCCcGGCu -3'
miRNA:   3'- -CGCGUauu----GCCGua-----GGCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 11208 0.66 0.510354
Target:  5'- cCGCc--ACGGCcucauacugagugCCGUucGCCCUGGCg -3'
miRNA:   3'- cGCGuauUGCCGua-----------GGCG--CGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 20140 0.71 0.234865
Target:  5'- uCGUAUGcgGCGGCAUa-GCGCCC-GGCc -3'
miRNA:   3'- cGCGUAU--UGCCGUAggCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 34565 0.78 0.072297
Target:  5'- uGCGCAcgcuCGGCAggccaUCCGCGCUCgGGCg -3'
miRNA:   3'- -CGCGUauu-GCCGU-----AGGCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 27210 0.78 0.072297
Target:  5'- aGCGCAgccCGGCGcgcuucgccccUCCGCGCCC-GGCc -3'
miRNA:   3'- -CGCGUauuGCCGU-----------AGGCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 2310 0.77 0.099411
Target:  5'- cGCGCGcGAgGGUGaCCGUGCCgCUGGCg -3'
miRNA:   3'- -CGCGUaUUgCCGUaGGCGCGG-GACCG- -5'
23102 3' -57.5 NC_005178.1 + 17084 0.77 0.10056
Target:  5'- gGCG-GUGGCGGCggcgaucugcucgacGUCCGCGUCCUGGg -3'
miRNA:   3'- -CGCgUAUUGCCG---------------UAGGCGCGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 22883 0.76 0.111472
Target:  5'- cGCGCcguccuccAUGGCGGCGg-CGCGCuCCUGGUa -3'
miRNA:   3'- -CGCG--------UAUUGCCGUagGCGCG-GGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.