Results 21 - 22 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23102 | 5' | -53 | NC_005178.1 | + | 27748 | 0.74 | 0.29823 |
Target: 5'- uGGAUUuUUGCGAGGUUGACGGCgCguagGCu -3' miRNA: 3'- -CUUGAuAGCGUUCCAGCUGCCG-Ga---CG- -5' |
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23102 | 5' | -53 | NC_005178.1 | + | 11665 | 1.13 | 0.000583 |
Target: 5'- uGAACUAUCGCAAGGUCGACGGCCUGCg -3' miRNA: 3'- -CUUGAUAGCGUUCCAGCUGCCGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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