miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23103 3' -54.2 NC_005178.1 + 21332 0.66 0.689075
Target:  5'- uCGGGGAUaAUGCCCGCugcgGCAUG-GCCGa -3'
miRNA:   3'- -GCUCUUGcUGUGGGCG----CGUAUaCGGU- -5'
23103 3' -54.2 NC_005178.1 + 33238 0.66 0.689075
Target:  5'- gGGGAugGACAgCgGCGCAU---CCAu -3'
miRNA:   3'- gCUCUugCUGUgGgCGCGUAuacGGU- -5'
23103 3' -54.2 NC_005178.1 + 6195 0.66 0.677797
Target:  5'- uGAGGAguACAUCCGCGaCAUGgcgaGCCGu -3'
miRNA:   3'- gCUCUUgcUGUGGGCGC-GUAUa---CGGU- -5'
23103 3' -54.2 NC_005178.1 + 28915 0.66 0.677797
Target:  5'- aCGAGAagguuuucgACGACAccauCCCGCGUccggcacgGCCAu -3'
miRNA:   3'- -GCUCU---------UGCUGU----GGGCGCGuaua----CGGU- -5'
23103 3' -54.2 NC_005178.1 + 26743 0.66 0.655112
Target:  5'- aGAGcguuACGACGCUCGCgGCugggcUcgGCCAg -3'
miRNA:   3'- gCUCu---UGCUGUGGGCG-CGu----AuaCGGU- -5'
23103 3' -54.2 NC_005178.1 + 6238 0.66 0.64373
Target:  5'- -cGGcGCGGCGCCagGCGCAUA-GCCc -3'
miRNA:   3'- gcUCuUGCUGUGGg-CGCGUAUaCGGu -5'
23103 3' -54.2 NC_005178.1 + 20862 0.67 0.60956
Target:  5'- --uGGGCGAUGCCUGCGCcg--GCCu -3'
miRNA:   3'- gcuCUUGCUGUGGGCGCGuauaCGGu -5'
23103 3' -54.2 NC_005178.1 + 12932 0.67 0.598198
Target:  5'- gGAGGACGugGCgCGC-CAgGUGCUg -3'
miRNA:   3'- gCUCUUGCugUGgGCGcGUaUACGGu -5'
23103 3' -54.2 NC_005178.1 + 19885 0.67 0.586867
Target:  5'- -uGGAugGGCGCCCuaUGgAUGUGCCGg -3'
miRNA:   3'- gcUCUugCUGUGGGc-GCgUAUACGGU- -5'
23103 3' -54.2 NC_005178.1 + 23018 0.68 0.564336
Target:  5'- -aAGGACGACcacCCCGCGauccuggAUGCCGa -3'
miRNA:   3'- gcUCUUGCUGu--GGGCGCgua----UACGGU- -5'
23103 3' -54.2 NC_005178.1 + 30586 0.68 0.542039
Target:  5'- uCGGcAGCGACACCUGgCGCGUGUaCCc -3'
miRNA:   3'- -GCUcUUGCUGUGGGC-GCGUAUAcGGu -5'
23103 3' -54.2 NC_005178.1 + 4736 0.68 0.530999
Target:  5'- uCGccAACGACugCCGUGCAgGUGCg- -3'
miRNA:   3'- -GCucUUGCUGugGGCGCGUaUACGgu -5'
23103 3' -54.2 NC_005178.1 + 23232 0.69 0.477178
Target:  5'- --cGAGCG-CAUCCGCGCcgagGUGCCc -3'
miRNA:   3'- gcuCUUGCuGUGGGCGCGua--UACGGu -5'
23103 3' -54.2 NC_005178.1 + 3126 0.71 0.397201
Target:  5'- gGAGaAGCGcaGCGCCCGCGC---UGCCc -3'
miRNA:   3'- gCUC-UUGC--UGUGGGCGCGuauACGGu -5'
23103 3' -54.2 NC_005178.1 + 26090 0.71 0.369508
Target:  5'- cCGAgGGGCGgacGCugCCGCaGCGUcgGCCAa -3'
miRNA:   3'- -GCU-CUUGC---UGugGGCG-CGUAuaCGGU- -5'
23103 3' -54.2 NC_005178.1 + 26405 0.71 0.360575
Target:  5'- -cAGGGCGGCggccagggcGCCCGCGCugauguggAUGCCAa -3'
miRNA:   3'- gcUCUUGCUG---------UGGGCGCGua------UACGGU- -5'
23103 3' -54.2 NC_005178.1 + 20013 0.74 0.258406
Target:  5'- aGcAGAACGGCcaGCCCGCGCccgcUGCCGg -3'
miRNA:   3'- gC-UCUUGCUG--UGGGCGCGuau-ACGGU- -5'
23103 3' -54.2 NC_005178.1 + 5840 0.81 0.07817
Target:  5'- -aGGAACGACACCCGCGCAgacUGCgCGg -3'
miRNA:   3'- gcUCUUGCUGUGGGCGCGUau-ACG-GU- -5'
23103 3' -54.2 NC_005178.1 + 11731 1.09 0.000781
Target:  5'- aCGAGAACGACACCCGCGCAUAUGCCAc -3'
miRNA:   3'- -GCUCUUGCUGUGGGCGCGUAUACGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.