miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23105 3' -51.3 NC_005178.1 + 26253 0.66 0.825336
Target:  5'- cCGGCcACCAccuggGCGGACUcgaacaGCUCGGGGc -3'
miRNA:   3'- uGUCGcUGGU-----UGUUUGA------UGAGCCCUc -5'
23105 3' -51.3 NC_005178.1 + 23469 0.66 0.825336
Target:  5'- cCGGCGcgaaGCCGGCccGCUGCUCGGc-- -3'
miRNA:   3'- uGUCGC----UGGUUGuuUGAUGAGCCcuc -5'
23105 3' -51.3 NC_005178.1 + 33505 0.66 0.805571
Target:  5'- uACuGCcACCGGCAGGCg---CGGGAGu -3'
miRNA:   3'- -UGuCGcUGGUUGUUUGaugaGCCCUC- -5'
23105 3' -51.3 NC_005178.1 + 26108 0.66 0.805571
Target:  5'- cGCAGCGucgGCCAACAAcgccaagacgGCUAUggUGGGGc -3'
miRNA:   3'- -UGUCGC---UGGUUGUU----------UGAUGa-GCCCUc -5'
23105 3' -51.3 NC_005178.1 + 19410 0.67 0.763696
Target:  5'- aACGGCG-CgCAGcCGAGCUGCUCGGc-- -3'
miRNA:   3'- -UGUCGCuG-GUU-GUUUGAUGAGCCcuc -5'
23105 3' -51.3 NC_005178.1 + 9319 0.67 0.763696
Target:  5'- gGCAGCGGCCuggauAGCGgcGGCgccGCUCaGGAGc -3'
miRNA:   3'- -UGUCGCUGG-----UUGU--UUGa--UGAGcCCUC- -5'
23105 3' -51.3 NC_005178.1 + 14854 0.67 0.740686
Target:  5'- gGCAGCGAcCCGGCGAuccaGCUCGGccugggcGAGg -3'
miRNA:   3'- -UGUCGCU-GGUUGUUuga-UGAGCC-------CUC- -5'
23105 3' -51.3 NC_005178.1 + 31575 0.68 0.730652
Target:  5'- gGCAGCGcCCcGCGAACgACUcCGGGu- -3'
miRNA:   3'- -UGUCGCuGGuUGUUUGaUGA-GCCCuc -5'
23105 3' -51.3 NC_005178.1 + 31519 0.68 0.708046
Target:  5'- gACGGCGGuCUGGCGAuGCUGCgCGGcGAGg -3'
miRNA:   3'- -UGUCGCU-GGUUGUU-UGAUGaGCC-CUC- -5'
23105 3' -51.3 NC_005178.1 + 24975 0.68 0.683952
Target:  5'- -aGGCGGCCGucgaugcguugcaGCAGuucgaACUCGGGAGa -3'
miRNA:   3'- ugUCGCUGGU-------------UGUUuga--UGAGCCCUC- -5'
23105 3' -51.3 NC_005178.1 + 28288 0.69 0.660776
Target:  5'- -gGGUGACCGGCGcugcgggAGCUGC-CGGGGc -3'
miRNA:   3'- ugUCGCUGGUUGU-------UUGAUGaGCCCUc -5'
23105 3' -51.3 NC_005178.1 + 25347 0.69 0.650302
Target:  5'- -uGGCGACCAugccagcCAGGCUgGC-CGGGAGc -3'
miRNA:   3'- ugUCGCUGGUu------GUUUGA-UGaGCCCUC- -5'
23105 3' -51.3 NC_005178.1 + 25395 0.69 0.638646
Target:  5'- gACAGcCGACCAGCAGGCgGCcCGGa-- -3'
miRNA:   3'- -UGUC-GCUGGUUGUUUGaUGaGCCcuc -5'
23105 3' -51.3 NC_005178.1 + 24452 0.69 0.626984
Target:  5'- aGCGGUGGCCAGCGcuGAUguUUCGGGcAGa -3'
miRNA:   3'- -UGUCGCUGGUUGU--UUGauGAGCCC-UC- -5'
23105 3' -51.3 NC_005178.1 + 34396 0.69 0.626984
Target:  5'- gACAGCGGCCuccuGgAAAUcACUCaGGAGa -3'
miRNA:   3'- -UGUCGCUGGu---UgUUUGaUGAGcCCUC- -5'
23105 3' -51.3 NC_005178.1 + 33200 0.7 0.580496
Target:  5'- --cGCGACCG--GAGUUGCUCGGGGGu -3'
miRNA:   3'- uguCGCUGGUugUUUGAUGAGCCCUC- -5'
23105 3' -51.3 NC_005178.1 + 12656 0.7 0.557499
Target:  5'- uCGGCGGCCGGCGcGCUGg-CGGGuGg -3'
miRNA:   3'- uGUCGCUGGUUGUuUGAUgaGCCCuC- -5'
23105 3' -51.3 NC_005178.1 + 25658 0.73 0.407306
Target:  5'- gGCAGCaGGCCGagcuggGCAAACUGCUCGcGGc- -3'
miRNA:   3'- -UGUCG-CUGGU------UGUUUGAUGAGC-CCuc -5'
23105 3' -51.3 NC_005178.1 + 12249 1.08 0.001737
Target:  5'- gACAGCGACCAACAAACUACUCGGGAGc -3'
miRNA:   3'- -UGUCGCUGGUUGUUUGAUGAGCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.