miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23105 5' -56 NC_005178.1 + 31053 0.66 0.612152
Target:  5'- gUCUGGCCaGGcgucgccGCCGCUGGguuUUGCu -3'
miRNA:   3'- gGGACCGGcUU-------UGGCGACCacuAGCG- -5'
23105 5' -56 NC_005178.1 + 18647 0.66 0.602142
Target:  5'- -gCUGGgCGAGGCCGUaaGGUGAcuaucccggCGCg -3'
miRNA:   3'- ggGACCgGCUUUGGCGa-CCACUa--------GCG- -5'
23105 5' -56 NC_005178.1 + 12112 0.66 0.602142
Target:  5'- gCCUGGCCGAugggcgcGCCGcCUGcGccGA-CGCa -3'
miRNA:   3'- gGGACCGGCUu------UGGC-GAC-Ca-CUaGCG- -5'
23105 5' -56 NC_005178.1 + 12768 0.66 0.59659
Target:  5'- gCCCUGcGCCGcgccuacguccucGACCGgcaguccCUGGaGGUCGCg -3'
miRNA:   3'- -GGGAC-CGGCu------------UUGGC-------GACCaCUAGCG- -5'
23105 5' -56 NC_005178.1 + 21209 0.66 0.591046
Target:  5'- gUCUGGCUGGugagcguGCCGCccagGAUCGCc -3'
miRNA:   3'- gGGACCGGCUu------UGGCGaccaCUAGCG- -5'
23105 5' -56 NC_005178.1 + 7045 0.66 0.579984
Target:  5'- gUCCUGGCCGcgcuGAGCCGCauUGaGUGccCGg -3'
miRNA:   3'- -GGGACCGGC----UUUGGCG--AC-CACuaGCg -5'
23105 5' -56 NC_005178.1 + 34743 0.66 0.579984
Target:  5'- cCCCUGGCgGGcaucggcgaccAGuuGCUGGcGGUUGg -3'
miRNA:   3'- -GGGACCGgCU-----------UUggCGACCaCUAGCg -5'
23105 5' -56 NC_005178.1 + 7118 0.66 0.568967
Target:  5'- aCCUccagcGGCCGgcGCCGCUGaacaaccccGUCGCg -3'
miRNA:   3'- gGGA-----CCGGCuuUGGCGACcac------UAGCG- -5'
23105 5' -56 NC_005178.1 + 15864 0.66 0.568967
Target:  5'- -aCUGGCCgucGAAACaggGCuUGGUGAagGCg -3'
miRNA:   3'- ggGACCGG---CUUUGg--CG-ACCACUagCG- -5'
23105 5' -56 NC_005178.1 + 28197 0.66 0.558003
Target:  5'- gCCCUGGC---GACUGCUGGcGGcaCGCu -3'
miRNA:   3'- -GGGACCGgcuUUGGCGACCaCUa-GCG- -5'
23105 5' -56 NC_005178.1 + 14879 0.66 0.55691
Target:  5'- gCCUGGgCGAggUCGCccUGGgcuucgaUGAUCGg -3'
miRNA:   3'- gGGACCgGCUuuGGCG--ACC-------ACUAGCg -5'
23105 5' -56 NC_005178.1 + 1964 0.67 0.550364
Target:  5'- uUCCgGGCCGAuguugccGACCgugguaucgauaGCUGGUcggccuggccaaugcGGUCGCg -3'
miRNA:   3'- -GGGaCCGGCU-------UUGG------------CGACCA---------------CUAGCG- -5'
23105 5' -56 NC_005178.1 + 19910 0.67 0.5471
Target:  5'- aCCUGGCCGGucuuGCCggcGCUGGacucGAcCGUc -3'
miRNA:   3'- gGGACCGGCUu---UGG---CGACCa---CUaGCG- -5'
23105 5' -56 NC_005178.1 + 10266 0.67 0.5471
Target:  5'- gCCU-GCCGGccaCGCUGGUGGUagucgaGCa -3'
miRNA:   3'- gGGAcCGGCUuugGCGACCACUAg-----CG- -5'
23105 5' -56 NC_005178.1 + 16846 0.67 0.5471
Target:  5'- gCCUGGUCGc-GCCGCUccuggauGUGAUCaGCc -3'
miRNA:   3'- gGGACCGGCuuUGGCGAc------CACUAG-CG- -5'
23105 5' -56 NC_005178.1 + 13482 0.67 0.536264
Target:  5'- gUCCgGGCCGAuGCUGUgcagGGUGAUg-- -3'
miRNA:   3'- -GGGaCCGGCUuUGGCGa---CCACUAgcg -5'
23105 5' -56 NC_005178.1 + 14688 0.67 0.525505
Target:  5'- gCCUgGGCCacGACCGCcGGaucgaUGGUCGUg -3'
miRNA:   3'- gGGA-CCGGcuUUGGCGaCC-----ACUAGCG- -5'
23105 5' -56 NC_005178.1 + 28645 0.67 0.525505
Target:  5'- gCCgGGCCGAucCUGCUGGcccagGGUCu- -3'
miRNA:   3'- gGGaCCGGCUuuGGCGACCa----CUAGcg -5'
23105 5' -56 NC_005178.1 + 1978 0.67 0.525505
Target:  5'- aCgUGGCgCgGGAACCGCUGcagcagaGGUCGCg -3'
miRNA:   3'- gGgACCG-G-CUUUGGCGACca-----CUAGCG- -5'
23105 5' -56 NC_005178.1 + 3772 0.67 0.504241
Target:  5'- aCCUGuCCGu---UGCUGGUGAUCGa -3'
miRNA:   3'- gGGACcGGCuuugGCGACCACUAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.