Results 21 - 27 of 27 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23106 | 5' | -56 | NC_005178.1 | + | 28295 | 0.68 | 0.396816 |
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Target: 5'- ---cGGCGCUGCgggagcugccgggGCCGCUGGAGugGCu -3' miRNA: 3'- gauaCCGUGGCGag-----------CGGCGACCUU--UG- -5' |
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| 23106 | 5' | -56 | NC_005178.1 | + | 17352 | 0.68 | 0.393057 |
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Target: 5'- ---cGGCAgcCCGC--GCCgGCUGGAAACg -3' miRNA: 3'- gauaCCGU--GGCGagCGG-CGACCUUUG- -5' |
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| 23106 | 5' | -56 | NC_005178.1 | + | 10356 | 0.7 | 0.339527 |
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Target: 5'- ---gGGCugCGCUgGCCgaGCUGGuGGGCa -3' miRNA: 3'- gauaCCGugGCGAgCGG--CGACC-UUUG- -5' |
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| 23106 | 5' | -56 | NC_005178.1 | + | 28543 | 0.7 | 0.339527 |
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Target: 5'- aCUGggcgGGgGCCGUcCGCCGCgccaccGGggGCg -3' miRNA: 3'- -GAUa---CCgUGGCGaGCGGCGa-----CCuuUG- -5' |
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| 23106 | 5' | -56 | NC_005178.1 | + | 21810 | 0.7 | 0.306884 |
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Target: 5'- uUAUGGCGCUGCUCGCa-CUGcGAu-- -3' miRNA: 3'- gAUACCGUGGCGAGCGgcGAC-CUuug -5' |
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| 23106 | 5' | -56 | NC_005178.1 | + | 31061 | 0.72 | 0.248929 |
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Target: 5'- ---aGGCGUCGC-CGCCGCUGGGuuuuGCu -3' miRNA: 3'- gauaCCGUGGCGaGCGGCGACCUu---UG- -5' |
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| 23106 | 5' | -56 | NC_005178.1 | + | 4008 | 0.72 | 0.229645 |
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Target: 5'- --cUGcGCACCGUcCGCCGCUGcGAACu -3' miRNA: 3'- gauAC-CGUGGCGaGCGGCGACcUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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