Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23108 | 5' | -57.6 | NC_005178.1 | + | 22367 | 0.66 | 0.468482 |
Target: 5'- uAGGCCguugGCCAUGugcgGcUGGAGGCuuUCg -3' miRNA: 3'- -UCCGG----CGGUGCua--CaACCUCCGcuAG- -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 25149 | 0.66 | 0.458304 |
Target: 5'- aGGGCCGCCagcaagcccGCGAgcu--GAuGGCGGUCa -3' miRNA: 3'- -UCCGGCGG---------UGCUacaacCU-CCGCUAG- -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 15029 | 0.66 | 0.477742 |
Target: 5'- cGGGCCuaucacuGCCugGuGUGggGcguuGAGGCGGUCc -3' miRNA: 3'- -UCCGG-------CGGugC-UACaaC----CUCCGCUAG- -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 31734 | 0.66 | 0.458304 |
Target: 5'- cGGCCGUUGCGGgucagGUauccggcguuuUGGAGGuCGAUg -3' miRNA: 3'- uCCGGCGGUGCUa----CA-----------ACCUCC-GCUAg -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 26971 | 0.67 | 0.390603 |
Target: 5'- aAGGCgCGCCugGAUcgcuaccUGGAGGaCGAg- -3' miRNA: 3'- -UCCG-GCGGugCUAca-----ACCUCC-GCUag -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 20170 | 0.67 | 0.418822 |
Target: 5'- uAGGCCGaCUGC-AUGUUGGucuGGUaGAUCg -3' miRNA: 3'- -UCCGGC-GGUGcUACAACCu--CCG-CUAG- -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 16378 | 0.67 | 0.399871 |
Target: 5'- uGGUCGuCCACGAUGU---AGGCGGg- -3' miRNA: 3'- uCCGGC-GGUGCUACAaccUCCGCUag -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 15676 | 0.67 | 0.381476 |
Target: 5'- cGGGCCGaCCAgGAgcacGUUGGGGGaGAc- -3' miRNA: 3'- -UCCGGC-GGUgCUa---CAACCUCCgCUag -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 2520 | 0.68 | 0.363655 |
Target: 5'- cGcCCGCCAUGAgacuacUGGAGGCGAc- -3' miRNA: 3'- uCcGGCGGUGCUaca---ACCUCCGCUag -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 5554 | 0.68 | 0.363655 |
Target: 5'- uGGGCgGCUACGuc----GAGGCGAUCc -3' miRNA: 3'- -UCCGgCGGUGCuacaacCUCCGCUAG- -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 14669 | 0.68 | 0.372493 |
Target: 5'- -cGCCGCCGCcAUGgaGGAcgGcGCGAUCa -3' miRNA: 3'- ucCGGCGGUGcUACaaCCU--C-CGCUAG- -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 8857 | 0.68 | 0.346418 |
Target: 5'- cGGCCGCCAucugguCGggGUcuugaacagcaUGGAGGUGGa- -3' miRNA: 3'- uCCGGCGGU------GCuaCA-----------ACCUCCGCUag -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 17158 | 0.68 | 0.354963 |
Target: 5'- uGGUCGCCugGgcGUccagGGccggcuucaGGGCGGUCa -3' miRNA: 3'- uCCGGCGGugCuaCAa---CC---------UCCGCUAG- -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 33123 | 0.68 | 0.363655 |
Target: 5'- uGGUgGCUugGGUGgUGGcuGCGGUCg -3' miRNA: 3'- uCCGgCGGugCUACaACCucCGCUAG- -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 26765 | 0.68 | 0.372493 |
Target: 5'- uGGGCUcgGCCAgGAUGgcGGcGGCGuaGUCg -3' miRNA: 3'- -UCCGG--CGGUgCUACaaCCuCCGC--UAG- -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 15294 | 0.69 | 0.313729 |
Target: 5'- cGGGCCaGCCugGcgGUcGGcuuGGCGGUa -3' miRNA: 3'- -UCCGG-CGGugCuaCAaCCu--CCGCUAg -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 28264 | 0.69 | 0.313729 |
Target: 5'- uGGCCGCCGCcaauGGUGUcagUGG-GGUGAc- -3' miRNA: 3'- uCCGGCGGUG----CUACA---ACCuCCGCUag -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 16183 | 0.71 | 0.217869 |
Target: 5'- gGGGCCGCCGCGAaggcguUGUUGaaGAuGGUuuuGAUCg -3' miRNA: 3'- -UCCGGCGGUGCU------ACAAC--CU-CCG---CUAG- -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 31815 | 0.74 | 0.132366 |
Target: 5'- gAGGCCGCCAcCGAUGc----GGCGAUCu -3' miRNA: 3'- -UCCGGCGGU-GCUACaaccuCCGCUAG- -5' |
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23108 | 5' | -57.6 | NC_005178.1 | + | 14154 | 1.1 | 0.000283 |
Target: 5'- cAGGCCGCCACGAUGUUGGAGGCGAUCa -3' miRNA: 3'- -UCCGGCGGUGCUACAACCUCCGCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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