miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23109 5' -53.4 NC_005178.1 + 17869 0.66 0.750399
Target:  5'- -cCGGCGCCAUCuucuggccaagcccuGgcacgcggAUGGCGGugGAg -3'
miRNA:   3'- caGCCGUGGUAG---------------Caa------UGCCGCUugCU- -5'
23109 5' -53.4 NC_005178.1 + 28163 0.66 0.7461
Target:  5'- gGUCGGCGCC-UCGgcugUAuccgccucggcCGGCGcccuGGCGAc -3'
miRNA:   3'- -CAGCCGUGGuAGCa---AU-----------GCCGC----UUGCU- -5'
23109 5' -53.4 NC_005178.1 + 6394 0.66 0.735267
Target:  5'- cGUCuGCGCUcgAUUGUcGCGGCGAggcgcgccGCGAu -3'
miRNA:   3'- -CAGcCGUGG--UAGCAaUGCCGCU--------UGCU- -5'
23109 5' -53.4 NC_005178.1 + 13164 0.66 0.724323
Target:  5'- gGUCGGCugCGgc---GCGGUGAACa- -3'
miRNA:   3'- -CAGCCGugGUagcaaUGCCGCUUGcu -5'
23109 5' -53.4 NC_005178.1 + 21819 0.66 0.724323
Target:  5'- cGUCGGCcuucucugcgGCCGaggCGUUgcGCGGCGGcuCGAu -3'
miRNA:   3'- -CAGCCG----------UGGUa--GCAA--UGCCGCUu-GCU- -5'
23109 5' -53.4 NC_005178.1 + 24113 0.66 0.71328
Target:  5'- -aUGGCAagGUCGUgaccaagGCGGCGGGCu- -3'
miRNA:   3'- caGCCGUggUAGCAa------UGCCGCUUGcu -5'
23109 5' -53.4 NC_005178.1 + 22274 0.66 0.71328
Target:  5'- -cUGGCccGCCAg----GCGGCGGGCGAu -3'
miRNA:   3'- caGCCG--UGGUagcaaUGCCGCUUGCU- -5'
23109 5' -53.4 NC_005178.1 + 8990 0.66 0.71328
Target:  5'- -cCGGCGacgcccCCggUGgcGCGGCGGACGGc -3'
miRNA:   3'- caGCCGU------GGuaGCaaUGCCGCUUGCU- -5'
23109 5' -53.4 NC_005178.1 + 32897 0.67 0.690952
Target:  5'- uGUCGGCcauGCCAUUGgccagUugGGUGGuuuuCGGg -3'
miRNA:   3'- -CAGCCG---UGGUAGCa----AugCCGCUu---GCU- -5'
23109 5' -53.4 NC_005178.1 + 24698 0.67 0.679691
Target:  5'- cUCGGCuuCCGcuugcUGUUuccaGCGGCGAGCGGu -3'
miRNA:   3'- cAGCCGu-GGUa----GCAA----UGCCGCUUGCU- -5'
23109 5' -53.4 NC_005178.1 + 2566 0.67 0.668381
Target:  5'- gGUCGGCGCC-UCGgccagcGCGGCcaaguaGGACGc -3'
miRNA:   3'- -CAGCCGUGGuAGCaa----UGCCG------CUUGCu -5'
23109 5' -53.4 NC_005178.1 + 26000 0.67 0.657034
Target:  5'- cGUCGGCGCgA-CGUUucaGGCGcugGGCGAu -3'
miRNA:   3'- -CAGCCGUGgUaGCAAug-CCGC---UUGCU- -5'
23109 5' -53.4 NC_005178.1 + 16810 0.67 0.657034
Target:  5'- -cCGGCGCUcugcuGUUGggucaggGCGGCGAugGGc -3'
miRNA:   3'- caGCCGUGG-----UAGCaa-----UGCCGCUugCU- -5'
23109 5' -53.4 NC_005178.1 + 19985 0.67 0.63428
Target:  5'- uUCGGCACCGgcaGUUGuagccauuCGGCGGcAUGAu -3'
miRNA:   3'- cAGCCGUGGUag-CAAU--------GCCGCU-UGCU- -5'
23109 5' -53.4 NC_005178.1 + 29675 0.68 0.597889
Target:  5'- aUCGGCGCCG-CGcacagucacggACGGgGGACGGa -3'
miRNA:   3'- cAGCCGUGGUaGCaa---------UGCCgCUUGCU- -5'
23109 5' -53.4 NC_005178.1 + 22285 0.69 0.531846
Target:  5'- cGUCGGgGCCAUCGUcguggucUGCGGcCGGGa-- -3'
miRNA:   3'- -CAGCCgUGGUAGCA-------AUGCC-GCUUgcu -5'
23109 5' -53.4 NC_005178.1 + 23353 0.7 0.468617
Target:  5'- aUCGGCACCGgggCGUcgcaccaggGCGGCagucGGGCGAu -3'
miRNA:   3'- cAGCCGUGGUa--GCAa--------UGCCG----CUUGCU- -5'
23109 5' -53.4 NC_005178.1 + 29247 0.7 0.458277
Target:  5'- -gCGGCGCUGUCGUacuUGGCGAgaagACGGa -3'
miRNA:   3'- caGCCGUGGUAGCAau-GCCGCU----UGCU- -5'
23109 5' -53.4 NC_005178.1 + 12563 0.73 0.336299
Target:  5'- aUCgGGCGCCAcag--GCGGCGGACGAa -3'
miRNA:   3'- cAG-CCGUGGUagcaaUGCCGCUUGCU- -5'
23109 5' -53.4 NC_005178.1 + 16350 0.75 0.246284
Target:  5'- uUCGGUGCCGUcCGUgGCGGCGA-CGGu -3'
miRNA:   3'- cAGCCGUGGUA-GCAaUGCCGCUuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.