miRNA display CGI


Results 21 - 22 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23109 5' -53.4 NC_005178.1 + 16350 0.75 0.246284
Target:  5'- uUCGGUGCCGUcCGUgGCGGCGA-CGGu -3'
miRNA:   3'- cAGCCGUGGUA-GCAaUGCCGCUuGCU- -5'
23109 5' -53.4 NC_005178.1 + 17869 0.66 0.750399
Target:  5'- -cCGGCGCCAUCuucuggccaagcccuGgcacgcggAUGGCGGugGAg -3'
miRNA:   3'- caGCCGUGGUAG---------------Caa------UGCCGCUugCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.