miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23110 3' -59.6 NC_005178.1 + 32155 0.67 0.354258
Target:  5'- aCGGCACGGUCUaucacCGCCGcaUCCUcACCa -3'
miRNA:   3'- aGCUGUGCCGGGc----GUGGC--AGGAcUGG- -5'
23110 3' -59.6 NC_005178.1 + 3436 0.67 0.354258
Target:  5'- cCGGgAUGGUCC--ACCGgCCUGGCCg -3'
miRNA:   3'- aGCUgUGCCGGGcgUGGCaGGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 3370 0.67 0.354258
Target:  5'- cCGauGCACGGCCgGC-CCuUCC-GGCCg -3'
miRNA:   3'- aGC--UGUGCCGGgCGuGGcAGGaCUGG- -5'
23110 3' -59.6 NC_005178.1 + 3974 0.67 0.354258
Target:  5'- aCGACGaGGCCCG-GCCGcuuUCC-GACCc -3'
miRNA:   3'- aGCUGUgCCGGGCgUGGC---AGGaCUGG- -5'
23110 3' -59.6 NC_005178.1 + 10653 0.67 0.345997
Target:  5'- cCGGC-CGGCgucuCCGCGCCGacCCUGucucaGCCg -3'
miRNA:   3'- aGCUGuGCCG----GGCGUGGCa-GGAC-----UGG- -5'
23110 3' -59.6 NC_005178.1 + 33451 0.67 0.343546
Target:  5'- aUCGuuACGGCucagcaccugcacaCCGUGCCGaCCUGgACCa -3'
miRNA:   3'- -AGCugUGCCG--------------GGCGUGGCaGGAC-UGG- -5'
23110 3' -59.6 NC_005178.1 + 23659 0.67 0.337875
Target:  5'- gUCcGCGCuGGCCCGUucacGCCGggcggCgCUGGCCu -3'
miRNA:   3'- -AGcUGUG-CCGGGCG----UGGCa----G-GACUGG- -5'
23110 3' -59.6 NC_005178.1 + 6762 0.68 0.329102
Target:  5'- aUCGGCAucuuccuggcccuCGGCCUGCuGCUGaUCCUGGUCg -3'
miRNA:   3'- -AGCUGU-------------GCCGGGCG-UGGC-AGGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 22143 0.68 0.312065
Target:  5'- uUCGGCGCcgaaGCCCGCGCUGcugccgguuacggcUUCUGGCa -3'
miRNA:   3'- -AGCUGUGc---CGGGCGUGGC--------------AGGACUGg -5'
23110 3' -59.6 NC_005178.1 + 35256 0.68 0.306786
Target:  5'- cUCGcGCGCGGCugcgccgauaCCGUACCGgccaagcaUCUGGCCg -3'
miRNA:   3'- -AGC-UGUGCCG----------GGCGUGGCa-------GGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 2852 0.68 0.306786
Target:  5'- cUGAUgAUGGCCCGCACCGgCUacaGCCg -3'
miRNA:   3'- aGCUG-UGCCGGGCGUGGCaGGac-UGG- -5'
23110 3' -59.6 NC_005178.1 + 12103 0.68 0.299364
Target:  5'- gCGugGCGGgCCuggccgaugggCGCGCCG-CCUGcGCCg -3'
miRNA:   3'- aGCugUGCC-GG-----------GCGUGGCaGGAC-UGG- -5'
23110 3' -59.6 NC_005178.1 + 31644 0.68 0.299364
Target:  5'- gCGACuguaccCGGUgCGCACCGcgcagCUGACCg -3'
miRNA:   3'- aGCUGu-----GCCGgGCGUGGCag---GACUGG- -5'
23110 3' -59.6 NC_005178.1 + 11791 0.68 0.292082
Target:  5'- -aGGC-CGGCCUGCACauggaccaGgacacCCUGGCCg -3'
miRNA:   3'- agCUGuGCCGGGCGUGg-------Ca----GGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 17350 0.69 0.285647
Target:  5'- cUCGGCA--GCCCGCGCCGgcuggaaacgaucuaCCaGACCa -3'
miRNA:   3'- -AGCUGUgcCGGGCGUGGCa--------------GGaCUGG- -5'
23110 3' -59.6 NC_005178.1 + 3977 0.69 0.284232
Target:  5'- gCGACcagcacguCGGCUCGaUGCCGUCCUGgagaaaaGCCa -3'
miRNA:   3'- aGCUGu-------GCCGGGC-GUGGCAGGAC-------UGG- -5'
23110 3' -59.6 NC_005178.1 + 34782 0.69 0.277934
Target:  5'- uUCGAcCAgGGCCaGCugCGucUCCUGGCg -3'
miRNA:   3'- -AGCU-GUgCCGGgCGugGC--AGGACUGg -5'
23110 3' -59.6 NC_005178.1 + 9403 0.69 0.277934
Target:  5'- ---cCACGGCcaagaaCCGCACCGUCCacUGAgCg -3'
miRNA:   3'- agcuGUGCCG------GGCGUGGCAGG--ACUgG- -5'
23110 3' -59.6 NC_005178.1 + 12255 0.69 0.277934
Target:  5'- cUCGACcUGGUCCGCACCcUgCUGAa- -3'
miRNA:   3'- -AGCUGuGCCGGGCGUGGcAgGACUgg -5'
23110 3' -59.6 NC_005178.1 + 27648 0.69 0.271068
Target:  5'- cUGGCGCGGCCCuaa--GUCCUuGGCCg -3'
miRNA:   3'- aGCUGUGCCGGGcguggCAGGA-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.