miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23111 5' -57.7 NC_005178.1 + 37046 0.66 0.465723
Target:  5'- -gACGGCGccACCgugCUUGUGAAUCUGGCa -3'
miRNA:   3'- aaUGCCGU--UGGg--GGACGCUUGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 34975 0.66 0.465723
Target:  5'- --uCGGCAGCCCUg-Ga-AGCCCGGCc -3'
miRNA:   3'- aauGCCGUUGGGGgaCgcUUGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 20369 0.66 0.465723
Target:  5'- aUUGCGGCccuGACCgCCCUGaagcCGGcccuggacGCCCAGg -3'
miRNA:   3'- -AAUGCCG---UUGG-GGGAC----GCU--------UGGGUCg -5'
23111 5' -57.7 NC_005178.1 + 6707 0.66 0.445451
Target:  5'- ---gGGCGGCCUCaCUGCuGAGCCaggaGGUg -3'
miRNA:   3'- aaugCCGUUGGGG-GACG-CUUGGg---UCG- -5'
23111 5' -57.7 NC_005178.1 + 17632 0.66 0.44445
Target:  5'- cUGCGGCGGCa-CUgGCGGcaucgauccgccaGCCCGGCa -3'
miRNA:   3'- aAUGCCGUUGggGGaCGCU-------------UGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 9910 0.66 0.435501
Target:  5'- -aGCGGCGGCacguugaCCCUGgaGGGCC-AGCg -3'
miRNA:   3'- aaUGCCGUUGg------GGGACg-CUUGGgUCG- -5'
23111 5' -57.7 NC_005178.1 + 7645 0.66 0.435501
Target:  5'- --uCGGCGACCUCCagcGCGAgcugGCCCGu- -3'
miRNA:   3'- aauGCCGUUGGGGGa--CGCU----UGGGUcg -5'
23111 5' -57.7 NC_005178.1 + 30196 0.66 0.435501
Target:  5'- cUGCGGCGauggucacgcGCCCCuCUGuCGGcUCCAGg -3'
miRNA:   3'- aAUGCCGU----------UGGGG-GAC-GCUuGGGUCg -5'
23111 5' -57.7 NC_005178.1 + 28517 0.66 0.425682
Target:  5'- -cGCGGCAuuGCUCCagguCGAAgCCGGCa -3'
miRNA:   3'- aaUGCCGU--UGGGGgac-GCUUgGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 22271 0.66 0.425682
Target:  5'- ---aGGCuGGCCCgCCagGCGGcgggcgaugaaGCCCAGCa -3'
miRNA:   3'- aaugCCG-UUGGG-GGa-CGCU-----------UGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 5778 0.66 0.415995
Target:  5'- --cUGGCcGCCCCCUGUaGGucguCgCCGGCa -3'
miRNA:   3'- aauGCCGuUGGGGGACG-CUu---G-GGUCG- -5'
23111 5' -57.7 NC_005178.1 + 11463 0.66 0.415995
Target:  5'- cUGCGGCAgcguccGCCCCUcggGCGAugucgUCCAGg -3'
miRNA:   3'- aAUGCCGU------UGGGGGa--CGCUu----GGGUCg -5'
23111 5' -57.7 NC_005178.1 + 31571 0.67 0.397032
Target:  5'- cUGgGGCAGCgCCCC-GCGAACgacuCCGGg -3'
miRNA:   3'- aAUgCCGUUG-GGGGaCGCUUG----GGUCg -5'
23111 5' -57.7 NC_005178.1 + 10949 0.67 0.397032
Target:  5'- -cGCGGCccGCCUCCUGCc--CCCcGCg -3'
miRNA:   3'- aaUGCCGu-UGGGGGACGcuuGGGuCG- -5'
23111 5' -57.7 NC_005178.1 + 22928 0.67 0.387762
Target:  5'- -cGCGGCGACCCCUU-CGucguCCgAGUu -3'
miRNA:   3'- aaUGCCGUUGGGGGAcGCuu--GGgUCG- -5'
23111 5' -57.7 NC_005178.1 + 12190 0.67 0.387762
Target:  5'- --cCGGaCAGCUCCCgGCcAGCCUGGCu -3'
miRNA:   3'- aauGCC-GUUGGGGGaCGcUUGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 33913 0.67 0.387762
Target:  5'- -gGCGGCGAUgCUCggcgGcCGGugCCGGCu -3'
miRNA:   3'- aaUGCCGUUGgGGGa---C-GCUugGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 37072 0.67 0.387762
Target:  5'- -gGCGGCAGCacucgcuggcgUCCCggucgGCGA-CCUGGCg -3'
miRNA:   3'- aaUGCCGUUG-----------GGGGa----CGCUuGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 30240 0.67 0.368763
Target:  5'- ---aGGCgGACCCCCaUGCGcuggagcAGCCgGGCg -3'
miRNA:   3'- aaugCCG-UUGGGGG-ACGC-------UUGGgUCG- -5'
23111 5' -57.7 NC_005178.1 + 17785 0.67 0.360818
Target:  5'- -gACGGCAGCCcgauacagagcgCCCUGaUGGACCaGGUg -3'
miRNA:   3'- aaUGCCGUUGG------------GGGAC-GCUUGGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.