Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 17995 | 0.68 | 0.335206 |
Target: 5'- aUGCGGCuGCCCaggGU--GCCCAGCu -3' miRNA: 3'- aAUGCCGuUGGGggaCGcuUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 30836 | 0.68 | 0.310949 |
Target: 5'- -gGCGGC-ACCUCCUG---GCUCAGCa -3' miRNA: 3'- aaUGCCGuUGGGGGACgcuUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 19711 | 0.68 | 0.318884 |
Target: 5'- -gGCGGCAggcGCUCCCaggGUGcGCUCGGCc -3' miRNA: 3'- aaUGCCGU---UGGGGGa--CGCuUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 21682 | 0.68 | 0.326154 |
Target: 5'- cUGCGGCAACCacucccguCCCUG-GAGggaccagUCCAGCu -3' miRNA: 3'- aAUGCCGUUGG--------GGGACgCUU-------GGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 8111 | 0.68 | 0.343594 |
Target: 5'- --uUGGCAGCCCCUccuucgacaGUGAaaccgagccagcGCCCGGCg -3' miRNA: 3'- aauGCCGUUGGGGGa--------CGCU------------UGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 20487 | 0.68 | 0.343594 |
Target: 5'- -aAUGGCGGCCUCCggccgcaugGCGAagaugGCCC-GCa -3' miRNA: 3'- aaUGCCGUUGGGGGa--------CGCU-----UGGGuCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 10783 | 0.68 | 0.335206 |
Target: 5'- cUACGccGCcGCCaUCCUGgcCGAGCCCAGCc -3' miRNA: 3'- aAUGC--CGuUGG-GGGAC--GCUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 3022 | 0.68 | 0.310949 |
Target: 5'- -gACGaGCGcCgCCCCUGCG-ACgCAGCg -3' miRNA: 3'- aaUGC-CGUuG-GGGGACGCuUGgGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 26183 | 0.68 | 0.352131 |
Target: 5'- -cGCGGCGguGgCCgCUGCGGGCgUGGCg -3' miRNA: 3'- aaUGCCGU--UgGGgGACGCUUGgGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 8990 | 0.69 | 0.295533 |
Target: 5'- --cCGGCGacGCCCCCgguggcgcgGCGGacggcccccGCCCAGUc -3' miRNA: 3'- aauGCCGU--UGGGGGa--------CGCU---------UGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 23455 | 0.69 | 0.28805 |
Target: 5'- -gACGGCcagGGCgCCCggcGCGAAgCCGGCc -3' miRNA: 3'- aaUGCCG---UUGgGGGa--CGCUUgGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 35897 | 0.69 | 0.28805 |
Target: 5'- -aACGGC-GCCCCCgGUGAgggGCauuaCAGCg -3' miRNA: 3'- aaUGCCGuUGGGGGaCGCU---UGg---GUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 20457 | 0.69 | 0.303166 |
Target: 5'- -aAUGGCgAACCCCUUGCGc-UCCAGg -3' miRNA: 3'- aaUGCCG-UUGGGGGACGCuuGGGUCg -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 14852 | 0.69 | 0.273534 |
Target: 5'- --uCGGCAGCgaCCCgGCGA-UCCAGCu -3' miRNA: 3'- aauGCCGUUGg-GGGaCGCUuGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 35684 | 0.69 | 0.273534 |
Target: 5'- -cAgGGcCAACUCCUcaCGAACCCAGCg -3' miRNA: 3'- aaUgCC-GUUGGGGGacGCUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 16183 | 0.7 | 0.246269 |
Target: 5'- ---aGGUAACCCUgCUGCGAGCggugaCCGGCc -3' miRNA: 3'- aaugCCGUUGGGG-GACGCUUG-----GGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 22898 | 0.71 | 0.20401 |
Target: 5'- -gGCGGCGGCgcgCUCCUGguaGAACuCCAGCg -3' miRNA: 3'- aaUGCCGUUG---GGGGACg--CUUG-GGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 14026 | 0.71 | 0.20401 |
Target: 5'- -aGCGGaguGACgCCCUGaucagGAACCCAGCc -3' miRNA: 3'- aaUGCCg--UUGgGGGACg----CUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 21381 | 0.71 | 0.221296 |
Target: 5'- -cGCGGCGGCCCCCacc--ACCUGGCa -3' miRNA: 3'- aaUGCCGUUGGGGGacgcuUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 12353 | 0.72 | 0.182793 |
Target: 5'- -gGCGGCAaucgcuacagaGCCCCCgGCGAAgCCAu- -3' miRNA: 3'- aaUGCCGU-----------UGGGGGaCGCUUgGGUcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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