Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 15461 | 1.1 | 0.000262 |
Target: 5'- uUUACGGCAACCCCCUGCGAACCCAGCa -3' miRNA: 3'- -AAUGCCGUUGGGGGACGCUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 33782 | 0.78 | 0.064831 |
Target: 5'- -aGCGGCAugguGCCgCCCUugGCGAugGCCCGGCg -3' miRNA: 3'- aaUGCCGU----UGG-GGGA--CGCU--UGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 27966 | 0.76 | 0.097791 |
Target: 5'- -aGCGGCGACCgCCCaGCGcAGCgCGGCg -3' miRNA: 3'- aaUGCCGUUGG-GGGaCGC-UUGgGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 16545 | 0.76 | 0.094986 |
Target: 5'- -gGCGGUgcuGCCgCCCacgGCGAACCCGGUa -3' miRNA: 3'- aaUGCCGu--UGG-GGGa--CGCUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 10958 | 0.75 | 0.116326 |
Target: 5'- gUugGGCGGCCCCa-GCGAAUCCcuuGCu -3' miRNA: 3'- aAugCCGUUGGGGgaCGCUUGGGu--CG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 34731 | 0.74 | 0.142071 |
Target: 5'- -gGCGuGCAgcACCCCCUgGCGGGCaUCGGCg -3' miRNA: 3'- aaUGC-CGU--UGGGGGA-CGCUUG-GGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 24550 | 0.72 | 0.168183 |
Target: 5'- -aGCGGCGGaaUCCUGCuGGACaCCAGCa -3' miRNA: 3'- aaUGCCGUUggGGGACG-CUUG-GGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 12353 | 0.72 | 0.182793 |
Target: 5'- -gGCGGCAaucgcuacagaGCCCCCgGCGAAgCCAu- -3' miRNA: 3'- aaUGCCGU-----------UGGGGGaCGCUUgGGUcg -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 25784 | 0.72 | 0.168183 |
Target: 5'- cUGCGGCGgaACCCCCaUGgcuCGGGCCaCGGCc -3' miRNA: 3'- aAUGCCGU--UGGGGG-AC---GCUUGG-GUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 21381 | 0.71 | 0.221296 |
Target: 5'- -cGCGGCGGCCCCCacc--ACCUGGCa -3' miRNA: 3'- aaUGCCGUUGGGGGacgcuUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 22898 | 0.71 | 0.20401 |
Target: 5'- -gGCGGCGGCgcgCUCCUGguaGAACuCCAGCg -3' miRNA: 3'- aaUGCCGUUG---GGGGACg--CUUG-GGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 14026 | 0.71 | 0.20401 |
Target: 5'- -aGCGGaguGACgCCCUGaucagGAACCCAGCc -3' miRNA: 3'- aaUGCCg--UUGgGGGACg----CUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 16183 | 0.7 | 0.246269 |
Target: 5'- ---aGGUAACCCUgCUGCGAGCggugaCCGGCc -3' miRNA: 3'- aaugCCGUUGGGG-GACGCUUG-----GGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 14852 | 0.69 | 0.273534 |
Target: 5'- --uCGGCAGCgaCCCgGCGA-UCCAGCu -3' miRNA: 3'- aauGCCGUUGg-GGGaCGCUuGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 8990 | 0.69 | 0.295533 |
Target: 5'- --cCGGCGacGCCCCCgguggcgcgGCGGacggcccccGCCCAGUc -3' miRNA: 3'- aauGCCGU--UGGGGGa--------CGCU---------UGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 23455 | 0.69 | 0.28805 |
Target: 5'- -gACGGCcagGGCgCCCggcGCGAAgCCGGCc -3' miRNA: 3'- aaUGCCG---UUGgGGGa--CGCUUgGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 35684 | 0.69 | 0.273534 |
Target: 5'- -cAgGGcCAACUCCUcaCGAACCCAGCg -3' miRNA: 3'- aaUgCC-GUUGGGGGacGCUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 20457 | 0.69 | 0.303166 |
Target: 5'- -aAUGGCgAACCCCUUGCGc-UCCAGg -3' miRNA: 3'- aaUGCCG-UUGGGGGACGCuuGGGUCg -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 35897 | 0.69 | 0.28805 |
Target: 5'- -aACGGC-GCCCCCgGUGAgggGCauuaCAGCg -3' miRNA: 3'- aaUGCCGuUGGGGGaCGCU---UGg---GUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 17995 | 0.68 | 0.335206 |
Target: 5'- aUGCGGCuGCCCaggGU--GCCCAGCu -3' miRNA: 3'- aAUGCCGuUGGGggaCGcuUGGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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