Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 3022 | 0.68 | 0.310949 |
Target: 5'- -gACGaGCGcCgCCCCUGCG-ACgCAGCg -3' miRNA: 3'- aaUGC-CGUuG-GGGGACGCuUGgGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 19711 | 0.68 | 0.318884 |
Target: 5'- -gGCGGCAggcGCUCCCaggGUGcGCUCGGCc -3' miRNA: 3'- aaUGCCGU---UGGGGGa--CGCuUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 21682 | 0.68 | 0.326154 |
Target: 5'- cUGCGGCAACCacucccguCCCUG-GAGggaccagUCCAGCu -3' miRNA: 3'- aAUGCCGUUGG--------GGGACgCUU-------GGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 10783 | 0.68 | 0.335206 |
Target: 5'- cUACGccGCcGCCaUCCUGgcCGAGCCCAGCc -3' miRNA: 3'- aAUGC--CGuUGG-GGGAC--GCUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 17995 | 0.68 | 0.335206 |
Target: 5'- aUGCGGCuGCCCaggGU--GCCCAGCu -3' miRNA: 3'- aAUGCCGuUGGGggaCGcuUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 20487 | 0.68 | 0.343594 |
Target: 5'- -aAUGGCGGCCUCCggccgcaugGCGAagaugGCCC-GCa -3' miRNA: 3'- aaUGCCGUUGGGGGa--------CGCU-----UGGGuCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 8111 | 0.68 | 0.343594 |
Target: 5'- --uUGGCAGCCCCUccuucgacaGUGAaaccgagccagcGCCCGGCg -3' miRNA: 3'- aauGCCGUUGGGGGa--------CGCU------------UGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 26183 | 0.68 | 0.352131 |
Target: 5'- -cGCGGCGguGgCCgCUGCGGGCgUGGCg -3' miRNA: 3'- aaUGCCGU--UgGGgGACGCUUGgGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 17785 | 0.67 | 0.360818 |
Target: 5'- -gACGGCAGCCcgauacagagcgCCCUGaUGGACCaGGUg -3' miRNA: 3'- aaUGCCGUUGG------------GGGAC-GCUUGGgUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 30240 | 0.67 | 0.368763 |
Target: 5'- ---aGGCgGACCCCCaUGCGcuggagcAGCCgGGCg -3' miRNA: 3'- aaugCCG-UUGGGGG-ACGC-------UUGGgUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 22928 | 0.67 | 0.387762 |
Target: 5'- -cGCGGCGACCCCUU-CGucguCCgAGUu -3' miRNA: 3'- aaUGCCGUUGGGGGAcGCuu--GGgUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 33913 | 0.67 | 0.387762 |
Target: 5'- -gGCGGCGAUgCUCggcgGcCGGugCCGGCu -3' miRNA: 3'- aaUGCCGUUGgGGGa---C-GCUugGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 37072 | 0.67 | 0.387762 |
Target: 5'- -gGCGGCAGCacucgcuggcgUCCCggucgGCGA-CCUGGCg -3' miRNA: 3'- aaUGCCGUUG-----------GGGGa----CGCUuGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 12190 | 0.67 | 0.387762 |
Target: 5'- --cCGGaCAGCUCCCgGCcAGCCUGGCu -3' miRNA: 3'- aauGCC-GUUGGGGGaCGcUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 10949 | 0.67 | 0.397032 |
Target: 5'- -cGCGGCccGCCUCCUGCc--CCCcGCg -3' miRNA: 3'- aaUGCCGu-UGGGGGACGcuuGGGuCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 31571 | 0.67 | 0.397032 |
Target: 5'- cUGgGGCAGCgCCCC-GCGAACgacuCCGGg -3' miRNA: 3'- aAUgCCGUUG-GGGGaCGCUUG----GGUCg -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 5778 | 0.66 | 0.415995 |
Target: 5'- --cUGGCcGCCCCCUGUaGGucguCgCCGGCa -3' miRNA: 3'- aauGCCGuUGGGGGACG-CUu---G-GGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 11463 | 0.66 | 0.415995 |
Target: 5'- cUGCGGCAgcguccGCCCCUcggGCGAugucgUCCAGg -3' miRNA: 3'- aAUGCCGU------UGGGGGa--CGCUu----GGGUCg -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 28517 | 0.66 | 0.425682 |
Target: 5'- -cGCGGCAuuGCUCCagguCGAAgCCGGCa -3' miRNA: 3'- aaUGCCGU--UGGGGgac-GCUUgGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 22271 | 0.66 | 0.425682 |
Target: 5'- ---aGGCuGGCCCgCCagGCGGcgggcgaugaaGCCCAGCa -3' miRNA: 3'- aaugCCG-UUGGG-GGa-CGCU-----------UGGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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