miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23111 5' -57.7 NC_005178.1 + 17995 0.68 0.335206
Target:  5'- aUGCGGCuGCCCaggGU--GCCCAGCu -3'
miRNA:   3'- aAUGCCGuUGGGggaCGcuUGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 19711 0.68 0.318884
Target:  5'- -gGCGGCAggcGCUCCCaggGUGcGCUCGGCc -3'
miRNA:   3'- aaUGCCGU---UGGGGGa--CGCuUGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 20369 0.66 0.465723
Target:  5'- aUUGCGGCccuGACCgCCCUGaagcCGGcccuggacGCCCAGg -3'
miRNA:   3'- -AAUGCCG---UUGG-GGGAC----GCU--------UGGGUCg -5'
23111 5' -57.7 NC_005178.1 + 20457 0.69 0.303166
Target:  5'- -aAUGGCgAACCCCUUGCGc-UCCAGg -3'
miRNA:   3'- aaUGCCG-UUGGGGGACGCuuGGGUCg -5'
23111 5' -57.7 NC_005178.1 + 20487 0.68 0.343594
Target:  5'- -aAUGGCGGCCUCCggccgcaugGCGAagaugGCCC-GCa -3'
miRNA:   3'- aaUGCCGUUGGGGGa--------CGCU-----UGGGuCG- -5'
23111 5' -57.7 NC_005178.1 + 21381 0.71 0.221296
Target:  5'- -cGCGGCGGCCCCCacc--ACCUGGCa -3'
miRNA:   3'- aaUGCCGUUGGGGGacgcuUGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 21682 0.68 0.326154
Target:  5'- cUGCGGCAACCacucccguCCCUG-GAGggaccagUCCAGCu -3'
miRNA:   3'- aAUGCCGUUGG--------GGGACgCUU-------GGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 22271 0.66 0.425682
Target:  5'- ---aGGCuGGCCCgCCagGCGGcgggcgaugaaGCCCAGCa -3'
miRNA:   3'- aaugCCG-UUGGG-GGa-CGCU-----------UGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 22898 0.71 0.20401
Target:  5'- -gGCGGCGGCgcgCUCCUGguaGAACuCCAGCg -3'
miRNA:   3'- aaUGCCGUUG---GGGGACg--CUUG-GGUCG- -5'
23111 5' -57.7 NC_005178.1 + 22928 0.67 0.387762
Target:  5'- -cGCGGCGACCCCUU-CGucguCCgAGUu -3'
miRNA:   3'- aaUGCCGUUGGGGGAcGCuu--GGgUCG- -5'
23111 5' -57.7 NC_005178.1 + 23455 0.69 0.28805
Target:  5'- -gACGGCcagGGCgCCCggcGCGAAgCCGGCc -3'
miRNA:   3'- aaUGCCG---UUGgGGGa--CGCUUgGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 24550 0.72 0.168183
Target:  5'- -aGCGGCGGaaUCCUGCuGGACaCCAGCa -3'
miRNA:   3'- aaUGCCGUUggGGGACG-CUUG-GGUCG- -5'
23111 5' -57.7 NC_005178.1 + 25784 0.72 0.168183
Target:  5'- cUGCGGCGgaACCCCCaUGgcuCGGGCCaCGGCc -3'
miRNA:   3'- aAUGCCGU--UGGGGG-AC---GCUUGG-GUCG- -5'
23111 5' -57.7 NC_005178.1 + 26183 0.68 0.352131
Target:  5'- -cGCGGCGguGgCCgCUGCGGGCgUGGCg -3'
miRNA:   3'- aaUGCCGU--UgGGgGACGCUUGgGUCG- -5'
23111 5' -57.7 NC_005178.1 + 27966 0.76 0.097791
Target:  5'- -aGCGGCGACCgCCCaGCGcAGCgCGGCg -3'
miRNA:   3'- aaUGCCGUUGG-GGGaCGC-UUGgGUCG- -5'
23111 5' -57.7 NC_005178.1 + 28517 0.66 0.425682
Target:  5'- -cGCGGCAuuGCUCCagguCGAAgCCGGCa -3'
miRNA:   3'- aaUGCCGU--UGGGGgac-GCUUgGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 30196 0.66 0.435501
Target:  5'- cUGCGGCGauggucacgcGCCCCuCUGuCGGcUCCAGg -3'
miRNA:   3'- aAUGCCGU----------UGGGG-GAC-GCUuGGGUCg -5'
23111 5' -57.7 NC_005178.1 + 30240 0.67 0.368763
Target:  5'- ---aGGCgGACCCCCaUGCGcuggagcAGCCgGGCg -3'
miRNA:   3'- aaugCCG-UUGGGGG-ACGC-------UUGGgUCG- -5'
23111 5' -57.7 NC_005178.1 + 30836 0.68 0.310949
Target:  5'- -gGCGGC-ACCUCCUG---GCUCAGCa -3'
miRNA:   3'- aaUGCCGuUGGGGGACgcuUGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 31571 0.67 0.397032
Target:  5'- cUGgGGCAGCgCCCC-GCGAACgacuCCGGg -3'
miRNA:   3'- aAUgCCGUUG-GGGGaCGCUUG----GGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.