Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 37072 | 0.67 | 0.387762 |
Target: 5'- -gGCGGCAGCacucgcuggcgUCCCggucgGCGA-CCUGGCg -3' miRNA: 3'- aaUGCCGUUG-----------GGGGa----CGCUuGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 37046 | 0.66 | 0.465723 |
Target: 5'- -gACGGCGccACCgugCUUGUGAAUCUGGCa -3' miRNA: 3'- aaUGCCGU--UGGg--GGACGCUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 35897 | 0.69 | 0.28805 |
Target: 5'- -aACGGC-GCCCCCgGUGAgggGCauuaCAGCg -3' miRNA: 3'- aaUGCCGuUGGGGGaCGCU---UGg---GUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 35684 | 0.69 | 0.273534 |
Target: 5'- -cAgGGcCAACUCCUcaCGAACCCAGCg -3' miRNA: 3'- aaUgCC-GUUGGGGGacGCUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 34975 | 0.66 | 0.465723 |
Target: 5'- --uCGGCAGCCCUg-Ga-AGCCCGGCc -3' miRNA: 3'- aauGCCGUUGGGGgaCgcUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 34731 | 0.74 | 0.142071 |
Target: 5'- -gGCGuGCAgcACCCCCUgGCGGGCaUCGGCg -3' miRNA: 3'- aaUGC-CGU--UGGGGGA-CGCUUG-GGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 33913 | 0.67 | 0.387762 |
Target: 5'- -gGCGGCGAUgCUCggcgGcCGGugCCGGCu -3' miRNA: 3'- aaUGCCGUUGgGGGa---C-GCUugGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 33782 | 0.78 | 0.064831 |
Target: 5'- -aGCGGCAugguGCCgCCCUugGCGAugGCCCGGCg -3' miRNA: 3'- aaUGCCGU----UGG-GGGA--CGCU--UGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 31571 | 0.67 | 0.397032 |
Target: 5'- cUGgGGCAGCgCCCC-GCGAACgacuCCGGg -3' miRNA: 3'- aAUgCCGUUG-GGGGaCGCUUG----GGUCg -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 30836 | 0.68 | 0.310949 |
Target: 5'- -gGCGGC-ACCUCCUG---GCUCAGCa -3' miRNA: 3'- aaUGCCGuUGGGGGACgcuUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 30240 | 0.67 | 0.368763 |
Target: 5'- ---aGGCgGACCCCCaUGCGcuggagcAGCCgGGCg -3' miRNA: 3'- aaugCCG-UUGGGGG-ACGC-------UUGGgUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 30196 | 0.66 | 0.435501 |
Target: 5'- cUGCGGCGauggucacgcGCCCCuCUGuCGGcUCCAGg -3' miRNA: 3'- aAUGCCGU----------UGGGG-GAC-GCUuGGGUCg -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 28517 | 0.66 | 0.425682 |
Target: 5'- -cGCGGCAuuGCUCCagguCGAAgCCGGCa -3' miRNA: 3'- aaUGCCGU--UGGGGgac-GCUUgGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 27966 | 0.76 | 0.097791 |
Target: 5'- -aGCGGCGACCgCCCaGCGcAGCgCGGCg -3' miRNA: 3'- aaUGCCGUUGG-GGGaCGC-UUGgGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 26183 | 0.68 | 0.352131 |
Target: 5'- -cGCGGCGguGgCCgCUGCGGGCgUGGCg -3' miRNA: 3'- aaUGCCGU--UgGGgGACGCUUGgGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 25784 | 0.72 | 0.168183 |
Target: 5'- cUGCGGCGgaACCCCCaUGgcuCGGGCCaCGGCc -3' miRNA: 3'- aAUGCCGU--UGGGGG-AC---GCUUGG-GUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 24550 | 0.72 | 0.168183 |
Target: 5'- -aGCGGCGGaaUCCUGCuGGACaCCAGCa -3' miRNA: 3'- aaUGCCGUUggGGGACG-CUUG-GGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 23455 | 0.69 | 0.28805 |
Target: 5'- -gACGGCcagGGCgCCCggcGCGAAgCCGGCc -3' miRNA: 3'- aaUGCCG---UUGgGGGa--CGCUUgGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 22928 | 0.67 | 0.387762 |
Target: 5'- -cGCGGCGACCCCUU-CGucguCCgAGUu -3' miRNA: 3'- aaUGCCGUUGGGGGAcGCuu--GGgUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 22898 | 0.71 | 0.20401 |
Target: 5'- -gGCGGCGGCgcgCUCCUGguaGAACuCCAGCg -3' miRNA: 3'- aaUGCCGUUG---GGGGACg--CUUG-GGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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