Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 22271 | 0.66 | 0.425682 |
Target: 5'- ---aGGCuGGCCCgCCagGCGGcgggcgaugaaGCCCAGCa -3' miRNA: 3'- aaugCCG-UUGGG-GGa-CGCU-----------UGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 21682 | 0.68 | 0.326154 |
Target: 5'- cUGCGGCAACCacucccguCCCUG-GAGggaccagUCCAGCu -3' miRNA: 3'- aAUGCCGUUGG--------GGGACgCUU-------GGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 21381 | 0.71 | 0.221296 |
Target: 5'- -cGCGGCGGCCCCCacc--ACCUGGCa -3' miRNA: 3'- aaUGCCGUUGGGGGacgcuUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 20487 | 0.68 | 0.343594 |
Target: 5'- -aAUGGCGGCCUCCggccgcaugGCGAagaugGCCC-GCa -3' miRNA: 3'- aaUGCCGUUGGGGGa--------CGCU-----UGGGuCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 20457 | 0.69 | 0.303166 |
Target: 5'- -aAUGGCgAACCCCUUGCGc-UCCAGg -3' miRNA: 3'- aaUGCCG-UUGGGGGACGCuuGGGUCg -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 20369 | 0.66 | 0.465723 |
Target: 5'- aUUGCGGCccuGACCgCCCUGaagcCGGcccuggacGCCCAGg -3' miRNA: 3'- -AAUGCCG---UUGG-GGGAC----GCU--------UGGGUCg -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 19711 | 0.68 | 0.318884 |
Target: 5'- -gGCGGCAggcGCUCCCaggGUGcGCUCGGCc -3' miRNA: 3'- aaUGCCGU---UGGGGGa--CGCuUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 17995 | 0.68 | 0.335206 |
Target: 5'- aUGCGGCuGCCCaggGU--GCCCAGCu -3' miRNA: 3'- aAUGCCGuUGGGggaCGcuUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 17785 | 0.67 | 0.360818 |
Target: 5'- -gACGGCAGCCcgauacagagcgCCCUGaUGGACCaGGUg -3' miRNA: 3'- aaUGCCGUUGG------------GGGAC-GCUUGGgUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 17632 | 0.66 | 0.44445 |
Target: 5'- cUGCGGCGGCa-CUgGCGGcaucgauccgccaGCCCGGCa -3' miRNA: 3'- aAUGCCGUUGggGGaCGCU-------------UGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 16545 | 0.76 | 0.094986 |
Target: 5'- -gGCGGUgcuGCCgCCCacgGCGAACCCGGUa -3' miRNA: 3'- aaUGCCGu--UGG-GGGa--CGCUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 16183 | 0.7 | 0.246269 |
Target: 5'- ---aGGUAACCCUgCUGCGAGCggugaCCGGCc -3' miRNA: 3'- aaugCCGUUGGGG-GACGCUUG-----GGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 15461 | 1.1 | 0.000262 |
Target: 5'- uUUACGGCAACCCCCUGCGAACCCAGCa -3' miRNA: 3'- -AAUGCCGUUGGGGGACGCUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 14852 | 0.69 | 0.273534 |
Target: 5'- --uCGGCAGCgaCCCgGCGA-UCCAGCu -3' miRNA: 3'- aauGCCGUUGg-GGGaCGCUuGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 14026 | 0.71 | 0.20401 |
Target: 5'- -aGCGGaguGACgCCCUGaucagGAACCCAGCc -3' miRNA: 3'- aaUGCCg--UUGgGGGACg----CUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 12353 | 0.72 | 0.182793 |
Target: 5'- -gGCGGCAaucgcuacagaGCCCCCgGCGAAgCCAu- -3' miRNA: 3'- aaUGCCGU-----------UGGGGGaCGCUUgGGUcg -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 12190 | 0.67 | 0.387762 |
Target: 5'- --cCGGaCAGCUCCCgGCcAGCCUGGCu -3' miRNA: 3'- aauGCC-GUUGGGGGaCGcUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 11463 | 0.66 | 0.415995 |
Target: 5'- cUGCGGCAgcguccGCCCCUcggGCGAugucgUCCAGg -3' miRNA: 3'- aAUGCCGU------UGGGGGa--CGCUu----GGGUCg -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 10958 | 0.75 | 0.116326 |
Target: 5'- gUugGGCGGCCCCa-GCGAAUCCcuuGCu -3' miRNA: 3'- aAugCCGUUGGGGgaCGCUUGGGu--CG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 10949 | 0.67 | 0.397032 |
Target: 5'- -cGCGGCccGCCUCCUGCc--CCCcGCg -3' miRNA: 3'- aaUGCCGu-UGGGGGACGcuuGGGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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