miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23111 5' -57.7 NC_005178.1 + 15461 1.1 0.000262
Target:  5'- uUUACGGCAACCCCCUGCGAACCCAGCa -3'
miRNA:   3'- -AAUGCCGUUGGGGGACGCUUGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 20369 0.66 0.465723
Target:  5'- aUUGCGGCccuGACCgCCCUGaagcCGGcccuggacGCCCAGg -3'
miRNA:   3'- -AAUGCCG---UUGG-GGGAC----GCU--------UGGGUCg -5'
23111 5' -57.7 NC_005178.1 + 6707 0.66 0.445451
Target:  5'- ---gGGCGGCCUCaCUGCuGAGCCaggaGGUg -3'
miRNA:   3'- aaugCCGUUGGGG-GACG-CUUGGg---UCG- -5'
23111 5' -57.7 NC_005178.1 + 7645 0.66 0.435501
Target:  5'- --uCGGCGACCUCCagcGCGAgcugGCCCGu- -3'
miRNA:   3'- aauGCCGUUGGGGGa--CGCU----UGGGUcg -5'
23111 5' -57.7 NC_005178.1 + 22271 0.66 0.425682
Target:  5'- ---aGGCuGGCCCgCCagGCGGcgggcgaugaaGCCCAGCa -3'
miRNA:   3'- aaugCCG-UUGGG-GGa-CGCU-----------UGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 10949 0.67 0.397032
Target:  5'- -cGCGGCccGCCUCCUGCc--CCCcGCg -3'
miRNA:   3'- aaUGCCGu-UGGGGGACGcuuGGGuCG- -5'
23111 5' -57.7 NC_005178.1 + 33913 0.67 0.387762
Target:  5'- -gGCGGCGAUgCUCggcgGcCGGugCCGGCu -3'
miRNA:   3'- aaUGCCGUUGgGGGa---C-GCUugGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 37072 0.67 0.387762
Target:  5'- -gGCGGCAGCacucgcuggcgUCCCggucgGCGA-CCUGGCg -3'
miRNA:   3'- aaUGCCGUUG-----------GGGGa----CGCUuGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 17785 0.67 0.360818
Target:  5'- -gACGGCAGCCcgauacagagcgCCCUGaUGGACCaGGUg -3'
miRNA:   3'- aaUGCCGUUGG------------GGGAC-GCUUGGgUCG- -5'
23111 5' -57.7 NC_005178.1 + 26183 0.68 0.352131
Target:  5'- -cGCGGCGguGgCCgCUGCGGGCgUGGCg -3'
miRNA:   3'- aaUGCCGU--UgGGgGACGCUUGgGUCG- -5'
23111 5' -57.7 NC_005178.1 + 24550 0.72 0.168183
Target:  5'- -aGCGGCGGaaUCCUGCuGGACaCCAGCa -3'
miRNA:   3'- aaUGCCGUUggGGGACG-CUUG-GGUCG- -5'
23111 5' -57.7 NC_005178.1 + 21381 0.71 0.221296
Target:  5'- -cGCGGCGGCCCCCacc--ACCUGGCa -3'
miRNA:   3'- aaUGCCGUUGGGGGacgcuUGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 16183 0.7 0.246269
Target:  5'- ---aGGUAACCCUgCUGCGAGCggugaCCGGCc -3'
miRNA:   3'- aaugCCGUUGGGG-GACGCUUG-----GGUCG- -5'
23111 5' -57.7 NC_005178.1 + 23455 0.69 0.28805
Target:  5'- -gACGGCcagGGCgCCCggcGCGAAgCCGGCc -3'
miRNA:   3'- aaUGCCG---UUGgGGGa--CGCUUgGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 35897 0.69 0.28805
Target:  5'- -aACGGC-GCCCCCgGUGAgggGCauuaCAGCg -3'
miRNA:   3'- aaUGCCGuUGGGGGaCGCU---UGg---GUCG- -5'
23111 5' -57.7 NC_005178.1 + 10783 0.68 0.335206
Target:  5'- cUACGccGCcGCCaUCCUGgcCGAGCCCAGCc -3'
miRNA:   3'- aAUGC--CGuUGG-GGGAC--GCUUGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 17995 0.68 0.335206
Target:  5'- aUGCGGCuGCCCaggGU--GCCCAGCu -3'
miRNA:   3'- aAUGCCGuUGGGggaCGcuUGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 37046 0.66 0.465723
Target:  5'- -gACGGCGccACCgugCUUGUGAAUCUGGCa -3'
miRNA:   3'- aaUGCCGU--UGGg--GGACGCUUGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 16545 0.76 0.094986
Target:  5'- -gGCGGUgcuGCCgCCCacgGCGAACCCGGUa -3'
miRNA:   3'- aaUGCCGu--UGG-GGGa--CGCUUGGGUCG- -5'
23111 5' -57.7 NC_005178.1 + 27966 0.76 0.097791
Target:  5'- -aGCGGCGACCgCCCaGCGcAGCgCGGCg -3'
miRNA:   3'- aaUGCCGUUGG-GGGaCGC-UUGgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.