Results 1 - 20 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 34731 | 0.74 | 0.142071 |
Target: 5'- -gGCGuGCAgcACCCCCUgGCGGGCaUCGGCg -3' miRNA: 3'- aaUGC-CGU--UGGGGGA-CGCUUG-GGUCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 8111 | 0.68 | 0.343594 |
Target: 5'- --uUGGCAGCCCCUccuucgacaGUGAaaccgagccagcGCCCGGCg -3' miRNA: 3'- aauGCCGUUGGGGGa--------CGCU------------UGGGUCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 30240 | 0.67 | 0.368763 |
Target: 5'- ---aGGCgGACCCCCaUGCGcuggagcAGCCgGGCg -3' miRNA: 3'- aaugCCG-UUGGGGG-ACGC-------UUGGgUCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 37046 | 0.66 | 0.465723 |
Target: 5'- -gACGGCGccACCgugCUUGUGAAUCUGGCa -3' miRNA: 3'- aaUGCCGU--UGGg--GGACGCUUGGGUCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 14026 | 0.71 | 0.20401 |
Target: 5'- -aGCGGaguGACgCCCUGaucagGAACCCAGCc -3' miRNA: 3'- aaUGCCg--UUGgGGGACg----CUUGGGUCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 14852 | 0.69 | 0.273534 |
Target: 5'- --uCGGCAGCgaCCCgGCGA-UCCAGCu -3' miRNA: 3'- aauGCCGUUGg-GGGaCGCUuGGGUCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 33782 | 0.78 | 0.064831 |
Target: 5'- -aGCGGCAugguGCCgCCCUugGCGAugGCCCGGCg -3' miRNA: 3'- aaUGCCGU----UGG-GGGA--CGCU--UGGGUCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 16545 | 0.76 | 0.094986 |
Target: 5'- -gGCGGUgcuGCCgCCCacgGCGAACCCGGUa -3' miRNA: 3'- aaUGCCGu--UGG-GGGa--CGCUUGGGUCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 27966 | 0.76 | 0.097791 |
Target: 5'- -aGCGGCGACCgCCCaGCGcAGCgCGGCg -3' miRNA: 3'- aaUGCCGUUGG-GGGaCGC-UUGgGUCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 21682 | 0.68 | 0.326154 |
Target: 5'- cUGCGGCAACCacucccguCCCUG-GAGggaccagUCCAGCu -3' miRNA: 3'- aAUGCCGUUGG--------GGGACgCUU-------GGGUCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 3022 | 0.68 | 0.310949 |
Target: 5'- -gACGaGCGcCgCCCCUGCG-ACgCAGCg -3' miRNA: 3'- aaUGC-CGUuG-GGGGACGCuUGgGUCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 20457 | 0.69 | 0.303166 |
Target: 5'- -aAUGGCgAACCCCUUGCGc-UCCAGg -3' miRNA: 3'- aaUGCCG-UUGGGGGACGCuuGGGUCg -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 25784 | 0.72 | 0.168183 |
Target: 5'- cUGCGGCGgaACCCCCaUGgcuCGGGCCaCGGCc -3' miRNA: 3'- aAUGCCGU--UGGGGG-AC---GCUUGG-GUCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 30836 | 0.68 | 0.310949 |
Target: 5'- -gGCGGC-ACCUCCUG---GCUCAGCa -3' miRNA: 3'- aaUGCCGuUGGGGGACgcuUGGGUCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 12353 | 0.72 | 0.182793 |
Target: 5'- -gGCGGCAaucgcuacagaGCCCCCgGCGAAgCCAu- -3' miRNA: 3'- aaUGCCGU-----------UGGGGGaCGCUUgGGUcg -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 8990 | 0.69 | 0.295533 |
Target: 5'- --cCGGCGacGCCCCCgguggcgcgGCGGacggcccccGCCCAGUc -3' miRNA: 3'- aauGCCGU--UGGGGGa--------CGCU---------UGGGUCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 19711 | 0.68 | 0.318884 |
Target: 5'- -gGCGGCAggcGCUCCCaggGUGcGCUCGGCc -3' miRNA: 3'- aaUGCCGU---UGGGGGa--CGCuUGGGUCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 20487 | 0.68 | 0.343594 |
Target: 5'- -aAUGGCGGCCUCCggccgcaugGCGAagaugGCCC-GCa -3' miRNA: 3'- aaUGCCGUUGGGGGa--------CGCU-----UGGGuCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 22898 | 0.71 | 0.20401 |
Target: 5'- -gGCGGCGGCgcgCUCCUGguaGAACuCCAGCg -3' miRNA: 3'- aaUGCCGUUG---GGGGACg--CUUG-GGUCG- -5' |
|||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 35684 | 0.69 | 0.273534 |
Target: 5'- -cAgGGcCAACUCCUcaCGAACCCAGCg -3' miRNA: 3'- aaUgCC-GUUGGGGGacGCUUGGGUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home