Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23111 | 5' | -57.7 | NC_005178.1 | + | 27966 | 0.76 | 0.097791 |
Target: 5'- -aGCGGCGACCgCCCaGCGcAGCgCGGCg -3' miRNA: 3'- aaUGCCGUUGG-GGGaCGC-UUGgGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 28517 | 0.66 | 0.425682 |
Target: 5'- -cGCGGCAuuGCUCCagguCGAAgCCGGCa -3' miRNA: 3'- aaUGCCGU--UGGGGgac-GCUUgGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 9910 | 0.66 | 0.435501 |
Target: 5'- -aGCGGCGGCacguugaCCCUGgaGGGCC-AGCg -3' miRNA: 3'- aaUGCCGUUGg------GGGACg-CUUGGgUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 20487 | 0.68 | 0.343594 |
Target: 5'- -aAUGGCGGCCUCCggccgcaugGCGAagaugGCCC-GCa -3' miRNA: 3'- aaUGCCGUUGGGGGa--------CGCU-----UGGGuCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 30196 | 0.66 | 0.435501 |
Target: 5'- cUGCGGCGauggucacgcGCCCCuCUGuCGGcUCCAGg -3' miRNA: 3'- aAUGCCGU----------UGGGG-GAC-GCUuGGGUCg -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 37046 | 0.66 | 0.465723 |
Target: 5'- -gACGGCGccACCgugCUUGUGAAUCUGGCa -3' miRNA: 3'- aaUGCCGU--UGGg--GGACGCUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 5778 | 0.66 | 0.415995 |
Target: 5'- --cUGGCcGCCCCCUGUaGGucguCgCCGGCa -3' miRNA: 3'- aauGCCGuUGGGGGACG-CUu---G-GGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 34975 | 0.66 | 0.465723 |
Target: 5'- --uCGGCAGCCCUg-Ga-AGCCCGGCc -3' miRNA: 3'- aauGCCGUUGGGGgaCgcUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 16545 | 0.76 | 0.094986 |
Target: 5'- -gGCGGUgcuGCCgCCCacgGCGAACCCGGUa -3' miRNA: 3'- aaUGCCGu--UGG-GGGa--CGCUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 33782 | 0.78 | 0.064831 |
Target: 5'- -aGCGGCAugguGCCgCCCUugGCGAugGCCCGGCg -3' miRNA: 3'- aaUGCCGU----UGG-GGGA--CGCU--UGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 17632 | 0.66 | 0.44445 |
Target: 5'- cUGCGGCGGCa-CUgGCGGcaucgauccgccaGCCCGGCa -3' miRNA: 3'- aAUGCCGUUGggGGaCGCU-------------UGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 21381 | 0.71 | 0.221296 |
Target: 5'- -cGCGGCGGCCCCCacc--ACCUGGCa -3' miRNA: 3'- aaUGCCGUUGGGGGacgcuUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 23455 | 0.69 | 0.28805 |
Target: 5'- -gACGGCcagGGCgCCCggcGCGAAgCCGGCc -3' miRNA: 3'- aaUGCCG---UUGgGGGa--CGCUUgGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 35897 | 0.69 | 0.28805 |
Target: 5'- -aACGGC-GCCCCCgGUGAgggGCauuaCAGCg -3' miRNA: 3'- aaUGCCGuUGGGGGaCGCU---UGg---GUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 10949 | 0.67 | 0.397032 |
Target: 5'- -cGCGGCccGCCUCCUGCc--CCCcGCg -3' miRNA: 3'- aaUGCCGu-UGGGGGACGcuuGGGuCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 10783 | 0.68 | 0.335206 |
Target: 5'- cUACGccGCcGCCaUCCUGgcCGAGCCCAGCc -3' miRNA: 3'- aAUGC--CGuUGG-GGGAC--GCUUGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 7645 | 0.66 | 0.435501 |
Target: 5'- --uCGGCGACCUCCagcGCGAgcugGCCCGu- -3' miRNA: 3'- aauGCCGUUGGGGGa--CGCU----UGGGUcg -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 22271 | 0.66 | 0.425682 |
Target: 5'- ---aGGCuGGCCCgCCagGCGGcgggcgaugaaGCCCAGCa -3' miRNA: 3'- aaugCCG-UUGGG-GGa-CGCU-----------UGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 37072 | 0.67 | 0.387762 |
Target: 5'- -gGCGGCAGCacucgcuggcgUCCCggucgGCGA-CCUGGCg -3' miRNA: 3'- aaUGCCGUUG-----------GGGGa----CGCUuGGGUCG- -5' |
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23111 | 5' | -57.7 | NC_005178.1 | + | 33913 | 0.67 | 0.387762 |
Target: 5'- -gGCGGCGAUgCUCggcgGcCGGugCCGGCu -3' miRNA: 3'- aaUGCCGUUGgGGGa---C-GCUugGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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