miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23112 5' -57.3 NC_005178.1 + 15562 1.11 0.000247
Target:  5'- aCCCCAGCCAAGCUGGCUCACAUCCUGa -3'
miRNA:   3'- -GGGGUCGGUUCGACCGAGUGUAGGAC- -5'
23112 5' -57.3 NC_005178.1 + 29416 0.66 0.486464
Target:  5'- aUCCC-GCCGGgcGCUGGCUCGguUUCa- -3'
miRNA:   3'- -GGGGuCGGUU--CGACCGAGUguAGGac -5'
23112 5' -57.3 NC_005178.1 + 14911 0.66 0.485416
Target:  5'- aCCCCAgcGCCAuccuGGUgggagGGUUCaaucgggagacagGCGUCCUGg -3'
miRNA:   3'- -GGGGU--CGGU----UCGa----CCGAG-------------UGUAGGAC- -5'
23112 5' -57.3 NC_005178.1 + 15986 0.66 0.476038
Target:  5'- aCUCCAGCCGuucGGCUGGaucaugCACAagCCg- -3'
miRNA:   3'- -GGGGUCGGU---UCGACCga----GUGUa-GGac -5'
23112 5' -57.3 NC_005178.1 + 11153 0.67 0.415995
Target:  5'- gCCCUGGCCGccGCccugGGCUucCugGUCCUGu -3'
miRNA:   3'- -GGGGUCGGUu-CGa---CCGA--GugUAGGAC- -5'
23112 5' -57.3 NC_005178.1 + 10270 0.67 0.410248
Target:  5'- -gCCGGCCAcgcuggugguagucgAGCagcucGGCggCACGUCCUGg -3'
miRNA:   3'- ggGGUCGGU---------------UCGa----CCGa-GUGUAGGAC- -5'
23112 5' -57.3 NC_005178.1 + 18064 0.68 0.360818
Target:  5'- gCCCGGUCGcucgcgagcAGCUGGCgaaccugcCGCAgcgCCUGg -3'
miRNA:   3'- gGGGUCGGU---------UCGACCGa-------GUGUa--GGAC- -5'
23112 5' -57.3 NC_005178.1 + 20418 0.68 0.352131
Target:  5'- aCCUGGCCAAGCUGcGCgaaACccucggCCUGg -3'
miRNA:   3'- gGGGUCGGUUCGAC-CGag-UGua----GGAC- -5'
23112 5' -57.3 NC_005178.1 + 35282 0.68 0.335207
Target:  5'- -aCCGGCCAAGCaucuggccggGGCUCGgGUCUg- -3'
miRNA:   3'- ggGGUCGGUUCGa---------CCGAGUgUAGGac -5'
23112 5' -57.3 NC_005178.1 + 16596 0.7 0.259609
Target:  5'- cCCCUGGUCAAGCUGG---GCGUCCa- -3'
miRNA:   3'- -GGGGUCGGUUCGACCgagUGUAGGac -5'
23112 5' -57.3 NC_005178.1 + 28185 0.73 0.163094
Target:  5'- gCCUCGGCCGGcgcccuggcgacuGCUGGCggCACGcUCCUGa -3'
miRNA:   3'- -GGGGUCGGUU-------------CGACCGa-GUGU-AGGAC- -5'
23112 5' -57.3 NC_005178.1 + 25357 0.71 0.215399
Target:  5'- -gCCAGCCAGGCUGGCcgggaGCuGUCCg- -3'
miRNA:   3'- ggGGUCGGUUCGACCGag---UG-UAGGac -5'
23112 5' -57.3 NC_005178.1 + 12285 0.71 0.239815
Target:  5'- gCCCUGGCCGAaaccGCUGGUgaUCGCGcugCCUGc -3'
miRNA:   3'- -GGGGUCGGUU----CGACCG--AGUGUa--GGAC- -5'
23112 5' -57.3 NC_005178.1 + 22690 0.71 0.239815
Target:  5'- gCCCAgGCCGAGCUGGaUCGCcggGUCgCUGc -3'
miRNA:   3'- gGGGU-CGGUUCGACCgAGUG---UAG-GAC- -5'
23112 5' -57.3 NC_005178.1 + 7652 0.71 0.246269
Target:  5'- cCUCCAGCgCGAGCUGGC-C-CGUCUg- -3'
miRNA:   3'- -GGGGUCG-GUUCGACCGaGuGUAGGac -5'
23112 5' -57.3 NC_005178.1 + 3725 0.7 0.259609
Target:  5'- aCCgCCAgGCCAAGCUGGC-CACcUUCa- -3'
miRNA:   3'- -GG-GGU-CGGUUCGACCGaGUGuAGGac -5'
23112 5' -57.3 NC_005178.1 + 35882 0.66 0.454513
Target:  5'- -aCCAGCCAguuggucAGCagaUGGCUCGCgcagacGUCCUc -3'
miRNA:   3'- ggGGUCGGU-------UCG---ACCGAGUG------UAGGAc -5'
23112 5' -57.3 NC_005178.1 + 31069 0.71 0.215399
Target:  5'- aCCUGGCCGAaCUGGCUCACcagcUCCg- -3'
miRNA:   3'- gGGGUCGGUUcGACCGAGUGu---AGGac -5'
23112 5' -57.3 NC_005178.1 + 27418 0.71 0.233502
Target:  5'- -aUCAGCCGguagAGCUGGCUguCGUCCa- -3'
miRNA:   3'- ggGGUCGGU----UCGACCGAguGUAGGac -5'
23112 5' -57.3 NC_005178.1 + 12476 0.7 0.259609
Target:  5'- --gCGGCCGAGCUGGUcgCGCugguGUCCUGc -3'
miRNA:   3'- gggGUCGGUUCGACCGa-GUG----UAGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.