miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23112 5' -57.3 NC_005178.1 + 3725 0.7 0.259609
Target:  5'- aCCgCCAgGCCAAGCUGGC-CACcUUCa- -3'
miRNA:   3'- -GG-GGU-CGGUUCGACCGaGUGuAGGac -5'
23112 5' -57.3 NC_005178.1 + 16596 0.7 0.259609
Target:  5'- cCCCUGGUCAAGCUGG---GCGUCCa- -3'
miRNA:   3'- -GGGGUCGGUUCGACCgagUGUAGGac -5'
23112 5' -57.3 NC_005178.1 + 7652 0.71 0.246269
Target:  5'- cCUCCAGCgCGAGCUGGC-C-CGUCUg- -3'
miRNA:   3'- -GGGGUCG-GUUCGACCGaGuGUAGGac -5'
23112 5' -57.3 NC_005178.1 + 12285 0.71 0.239815
Target:  5'- gCCCUGGCCGAaaccGCUGGUgaUCGCGcugCCUGc -3'
miRNA:   3'- -GGGGUCGGUU----CGACCG--AGUGUa--GGAC- -5'
23112 5' -57.3 NC_005178.1 + 22690 0.71 0.239815
Target:  5'- gCCCAgGCCGAGCUGGaUCGCcggGUCgCUGc -3'
miRNA:   3'- gGGGU-CGGUUCGACCgAGUG---UAG-GAC- -5'
23112 5' -57.3 NC_005178.1 + 27418 0.71 0.233502
Target:  5'- -aUCAGCCGguagAGCUGGCUguCGUCCa- -3'
miRNA:   3'- ggGGUCGGU----UCGACCGAguGUAGGac -5'
23112 5' -57.3 NC_005178.1 + 31069 0.71 0.215399
Target:  5'- aCCUGGCCGAaCUGGCUCACcagcUCCg- -3'
miRNA:   3'- gGGGUCGGUUcGACCGAGUGu---AGGac -5'
23112 5' -57.3 NC_005178.1 + 25357 0.71 0.215399
Target:  5'- -gCCAGCCAGGCUGGCcgggaGCuGUCCg- -3'
miRNA:   3'- ggGGUCGGUUCGACCGag---UG-UAGGac -5'
23112 5' -57.3 NC_005178.1 + 11633 0.72 0.198513
Target:  5'- aUCCCgcuGGCCAGGCUGGUgacCACGUCg-- -3'
miRNA:   3'- -GGGG---UCGGUUCGACCGa--GUGUAGgac -5'
23112 5' -57.3 NC_005178.1 + 28185 0.73 0.163094
Target:  5'- gCCUCGGCCGGcgcccuggcgacuGCUGGCggCACGcUCCUGa -3'
miRNA:   3'- -GGGGUCGGUU-------------CGACCGa-GUGU-AGGAC- -5'
23112 5' -57.3 NC_005178.1 + 15562 1.11 0.000247
Target:  5'- aCCCCAGCCAAGCUGGCUCACAUCCUGa -3'
miRNA:   3'- -GGGGUCGGUUCGACCGAGUGUAGGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.