miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23114 5' -49.6 NC_005178.1 + 28333 0.66 0.895328
Target:  5'- gUGGCGGGAGUGgCUgGuuGUCUuCGa- -3'
miRNA:   3'- -ACCGCCUUUAC-GAgCuuUAGAuGCca -5'
23114 5' -49.6 NC_005178.1 + 17092 0.67 0.853652
Target:  5'- cGGCGGcGAucUGCUCGAcGUCcGCGu- -3'
miRNA:   3'- aCCGCCuUU--ACGAGCUuUAGaUGCca -5'
23114 5' -49.6 NC_005178.1 + 35172 0.67 0.835046
Target:  5'- aUGGCGGAGAUcgUCGAGAa--GCGGg -3'
miRNA:   3'- -ACCGCCUUUAcgAGCUUUagaUGCCa -5'
23114 5' -49.6 NC_005178.1 + 26558 0.67 0.825367
Target:  5'- gGGCGGAuuuGGUGUagUCGGAua-UGCGGa -3'
miRNA:   3'- aCCGCCU---UUACG--AGCUUuagAUGCCa -5'
23114 5' -49.6 NC_005178.1 + 15964 0.68 0.802236
Target:  5'- gGGCGGuAGAUGCcgauuuggucguccUCGAuGUCguUGCGGUc -3'
miRNA:   3'- aCCGCC-UUUACG--------------AGCUuUAG--AUGCCA- -5'
23114 5' -49.6 NC_005178.1 + 21035 0.69 0.762814
Target:  5'- aGGCGGGGggcgcggcGUGCgUCGAGGUUgccggaGCGGUu -3'
miRNA:   3'- aCCGCCUU--------UACG-AGCUUUAGa-----UGCCA- -5'
23114 5' -49.6 NC_005178.1 + 37404 0.69 0.751766
Target:  5'- gGGCGGAGcUGCUUGAGGU--GgGGUu -3'
miRNA:   3'- aCCGCCUUuACGAGCUUUAgaUgCCA- -5'
23114 5' -49.6 NC_005178.1 + 33911 0.69 0.729262
Target:  5'- cUGGCGGcGAUGCUCGgcGgc--CGGUg -3'
miRNA:   3'- -ACCGCCuUUACGAGCuuUagauGCCA- -5'
23114 5' -49.6 NC_005178.1 + 28547 0.69 0.717835
Target:  5'- cGGCGcGGAGUcgGCuaUCGAcGUCUACGGc -3'
miRNA:   3'- aCCGC-CUUUA--CG--AGCUuUAGAUGCCa -5'
23114 5' -49.6 NC_005178.1 + 33117 0.69 0.717835
Target:  5'- gGGCGGugGUgGCUUGGGugguggCUGCGGUc -3'
miRNA:   3'- aCCGCCuuUA-CGAGCUUua----GAUGCCA- -5'
23114 5' -49.6 NC_005178.1 + 4267 0.7 0.659511
Target:  5'- aGGCGGucg-GCUUGGGcuUCUGCGGc -3'
miRNA:   3'- aCCGCCuuuaCGAGCUUu-AGAUGCCa -5'
23114 5' -49.6 NC_005178.1 + 6916 0.71 0.624054
Target:  5'- aGGCGcuGGUGCUgcCGAAAUCggugGCGGUu -3'
miRNA:   3'- aCCGCcuUUACGA--GCUUUAGa---UGCCA- -5'
23114 5' -49.6 NC_005178.1 + 26847 0.74 0.474867
Target:  5'- cUGGCGGuGAGUGCgacgCGGGAUUaGCGGa -3'
miRNA:   3'- -ACCGCC-UUUACGa---GCUUUAGaUGCCa -5'
23114 5' -49.6 NC_005178.1 + 16107 1.08 0.002901
Target:  5'- cUGGCGGAAAUGCUCGAAAUCUACGGUc -3'
miRNA:   3'- -ACCGCCUUUACGAGCUUUAGAUGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.