miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23115 3' -51.5 NC_005178.1 + 17315 0.66 0.85827
Target:  5'- gGC-CGCUCGGCGugcGAGAGGcuccaGACCg -3'
miRNA:   3'- -CGuGCGGGCUGCuu-CUCUUCca---UUGG- -5'
23115 3' -51.5 NC_005178.1 + 36365 0.66 0.85827
Target:  5'- uGCACGCUCuACGcGGGGAuAGGgAAUCu -3'
miRNA:   3'- -CGUGCGGGcUGCuUCUCU-UCCaUUGG- -5'
23115 3' -51.5 NC_005178.1 + 30210 0.66 0.855668
Target:  5'- aCGCGCCCcucugucggcuccaGGCGAu--GAAGGcgGACCc -3'
miRNA:   3'- cGUGCGGG--------------CUGCUucuCUUCCa-UUGG- -5'
23115 3' -51.5 NC_005178.1 + 33905 0.66 0.849509
Target:  5'- cCGCGCCUGGCGgcGAugcucGGcGGCCg -3'
miRNA:   3'- cGUGCGGGCUGCuuCUcuu--CCaUUGG- -5'
23115 3' -51.5 NC_005178.1 + 18643 0.66 0.849509
Target:  5'- uCAgGCUgGGCGAGGccguAAGGUGACUa -3'
miRNA:   3'- cGUgCGGgCUGCUUCuc--UUCCAUUGG- -5'
23115 3' -51.5 NC_005178.1 + 14854 0.66 0.839587
Target:  5'- gGCAgCGaCCCGGCGAuccagcucggccuGGGcGAGGUcGCCc -3'
miRNA:   3'- -CGU-GC-GGGCUGCU-------------UCUcUUCCAuUGG- -5'
23115 3' -51.5 NC_005178.1 + 12913 0.66 0.831255
Target:  5'- uGCugGCCgGugGugggcuGGAGGAcGUGGCg -3'
miRNA:   3'- -CGugCGGgCugCu-----UCUCUUcCAUUGg -5'
23115 3' -51.5 NC_005178.1 + 29346 0.66 0.831255
Target:  5'- cGCugGUCCGACGuuAGcGAccGgcACCg -3'
miRNA:   3'- -CGugCGGGCUGCu-UCuCUucCauUGG- -5'
23115 3' -51.5 NC_005178.1 + 33326 0.66 0.831255
Target:  5'- cCGCGCUgUGACGAGGGcGAcgaacAGGUcGCCg -3'
miRNA:   3'- cGUGCGG-GCUGCUUCU-CU-----UCCAuUGG- -5'
23115 3' -51.5 NC_005178.1 + 17994 0.66 0.821782
Target:  5'- aGCGCGUuuG-CGGGcGGAucAGGUGAUCa -3'
miRNA:   3'- -CGUGCGggCuGCUUcUCU--UCCAUUGG- -5'
23115 3' -51.5 NC_005178.1 + 10752 0.66 0.821782
Target:  5'- aGCGCGuCCCGGCu---GGAAGGccuGCCc -3'
miRNA:   3'- -CGUGC-GGGCUGcuucUCUUCCau-UGG- -5'
23115 3' -51.5 NC_005178.1 + 27676 0.67 0.802198
Target:  5'- cGCACGCCCGcgacGCGAGcGAGcaaugcgcgauAGGUGucAUCg -3'
miRNA:   3'- -CGUGCGGGC----UGCUU-CUCu----------UCCAU--UGG- -5'
23115 3' -51.5 NC_005178.1 + 30533 0.67 0.802198
Target:  5'- -gACGCUCGACGcggaucgucGAGGGcgacGGGUAGCg -3'
miRNA:   3'- cgUGCGGGCUGC---------UUCUCu---UCCAUUGg -5'
23115 3' -51.5 NC_005178.1 + 30562 0.67 0.802198
Target:  5'- uCGCGCCUGGCGAuccGuuGGUggUCg -3'
miRNA:   3'- cGUGCGGGCUGCUucuCuuCCAuuGG- -5'
23115 3' -51.5 NC_005178.1 + 36503 0.67 0.801198
Target:  5'- aGCGCGUCCaagauuugcuaguGGCGAuGGGAcggccgagcGGUAGCCu -3'
miRNA:   3'- -CGUGCGGG-------------CUGCUuCUCUu--------CCAUUGG- -5'
23115 3' -51.5 NC_005178.1 + 15727 0.67 0.79211
Target:  5'- cGCaACGCCuCGGcCGcAGAGAAGGccGACg -3'
miRNA:   3'- -CG-UGCGG-GCU-GCuUCUCUUCCa-UUGg -5'
23115 3' -51.5 NC_005178.1 + 35499 0.67 0.79211
Target:  5'- aGCGCGuaCCCGGCGAAGGucuacGggGcGUuAUCa -3'
miRNA:   3'- -CGUGC--GGGCUGCUUCU-----CuuC-CAuUGG- -5'
23115 3' -51.5 NC_005178.1 + 10304 0.67 0.79211
Target:  5'- gGCACGuCCUGGCGGAuAGccGAGG--GCCg -3'
miRNA:   3'- -CGUGC-GGGCUGCUUcUC--UUCCauUGG- -5'
23115 3' -51.5 NC_005178.1 + 11988 0.67 0.781841
Target:  5'- gGCGCGCUCGGCGuuGu---GGUAGgCa -3'
miRNA:   3'- -CGUGCGGGCUGCuuCucuuCCAUUgG- -5'
23115 3' -51.5 NC_005178.1 + 12103 0.67 0.765065
Target:  5'- aGCGCGUCCaGCGcuucccgcuguugcaGGGAGgcGGcGACCa -3'
miRNA:   3'- -CGUGCGGGcUGC---------------UUCUCuuCCaUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.