miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23115 5' -62 NC_005178.1 + 16532 0.66 0.318233
Target:  5'- -aGGUcaGGCCGGUggCGGUgcUGCCGCc -3'
miRNA:   3'- cgCCA--CUGGCCGgaGCCGguACGGCG- -5'
23115 5' -62 NC_005178.1 + 15881 0.66 0.318233
Target:  5'- aGUGGUuGCCgcaGGCCuUCGaCCAccgGCCGCa -3'
miRNA:   3'- -CGCCAcUGG---CCGG-AGCcGGUa--CGGCG- -5'
23115 5' -62 NC_005178.1 + 6763 0.66 0.318233
Target:  5'- uCGGcaucuucCUGGCCcUCGGCC-UGCUGCu -3'
miRNA:   3'- cGCCacu----GGCCGG-AGCCGGuACGGCG- -5'
23115 5' -62 NC_005178.1 + 7509 0.66 0.318233
Target:  5'- aGCGcGUGAauGGCC-CGGCgCugaGCUGCg -3'
miRNA:   3'- -CGC-CACUggCCGGaGCCG-Gua-CGGCG- -5'
23115 5' -62 NC_005178.1 + 20145 0.66 0.310666
Target:  5'- uGCGGcGGCauaGcGCC-CGGCCAUGUagGCc -3'
miRNA:   3'- -CGCCaCUGg--C-CGGaGCCGGUACGg-CG- -5'
23115 5' -62 NC_005178.1 + 9301 0.66 0.308423
Target:  5'- gGCGGcGGCCagcgaggcggcagcGGCCUggauagCGGCgGcGCCGCu -3'
miRNA:   3'- -CGCCaCUGG--------------CCGGA------GCCGgUaCGGCG- -5'
23115 5' -62 NC_005178.1 + 4761 0.66 0.303237
Target:  5'- aCGGcccGuCCGGCUUCGGCaaauccguuUcgGCCGCc -3'
miRNA:   3'- cGCCa--CuGGCCGGAGCCG---------GuaCGGCG- -5'
23115 5' -62 NC_005178.1 + 9002 0.66 0.303237
Target:  5'- cCGGUGGCgCGGCggaCGGCCc--CCGCc -3'
miRNA:   3'- cGCCACUG-GCCGga-GCCGGuacGGCG- -5'
23115 5' -62 NC_005178.1 + 24494 0.66 0.303237
Target:  5'- cGCGcUGACCgucuuguuguaGGCaUCGGCCAggcugGCCaGCa -3'
miRNA:   3'- -CGCcACUGG-----------CCGgAGCCGGUa----CGG-CG- -5'
23115 5' -62 NC_005178.1 + 30799 0.66 0.295946
Target:  5'- aGCGGUcg-CGGCCUCGaCCuggGCCGg -3'
miRNA:   3'- -CGCCAcugGCCGGAGCcGGua-CGGCg -5'
23115 5' -62 NC_005178.1 + 37139 0.66 0.295946
Target:  5'- gGCGGUGACUcuaugGaGCCUCuGCUGUGCgaugGCg -3'
miRNA:   3'- -CGCCACUGG-----C-CGGAGcCGGUACGg---CG- -5'
23115 5' -62 NC_005178.1 + 30566 0.66 0.293785
Target:  5'- aGCGGuUGGCgaggauggugcugaCGGUCgaaCGGCuCAUGCCGa -3'
miRNA:   3'- -CGCC-ACUG--------------GCCGGa--GCCG-GUACGGCg -5'
23115 5' -62 NC_005178.1 + 666 0.66 0.288791
Target:  5'- ----cGACCaGCCUUGGCUAUGgCCGa -3'
miRNA:   3'- cgccaCUGGcCGGAGCCGGUAC-GGCg -5'
23115 5' -62 NC_005178.1 + 4519 0.66 0.288791
Target:  5'- aGCGGcaacgcuCCGGCCugcccaUCGaGCCGgacGCCGCc -3'
miRNA:   3'- -CGCCacu----GGCCGG------AGC-CGGUa--CGGCG- -5'
23115 5' -62 NC_005178.1 + 27317 0.66 0.288791
Target:  5'- aGCGc--GCCGGCCUacugagcuaugCGGaCUAUGUCGCg -3'
miRNA:   3'- -CGCcacUGGCCGGA-----------GCC-GGUACGGCG- -5'
23115 5' -62 NC_005178.1 + 7089 0.66 0.284564
Target:  5'- gGCGGUGACCucGGUcgagugcagcgaguaCcuccagCGGCCGgcGCCGCu -3'
miRNA:   3'- -CGCCACUGG--CCG---------------Ga-----GCCGGUa-CGGCG- -5'
23115 5' -62 NC_005178.1 + 8544 0.67 0.274211
Target:  5'- aCGGUaGugCGcCCcagucaaUUGGUCAUGCCGCa -3'
miRNA:   3'- cGCCA-CugGCcGG-------AGCCGGUACGGCG- -5'
23115 5' -62 NC_005178.1 + 11865 0.67 0.270827
Target:  5'- cGCGaGUGACCGggucgauggccGCgagcaguuugcccagCUCGGCC-UGCUGCc -3'
miRNA:   3'- -CGC-CACUGGC-----------CG---------------GAGCCGGuACGGCG- -5'
23115 5' -62 NC_005178.1 + 2666 0.67 0.268145
Target:  5'- cGCGGUGguggauaugaguACCacGUUUCGGCCcUGCCGa -3'
miRNA:   3'- -CGCCAC------------UGGc-CGGAGCCGGuACGGCg -5'
23115 5' -62 NC_005178.1 + 24580 0.67 0.268145
Target:  5'- cCGGauACCGGCgacCUgGGCCGcuucgGCCGCa -3'
miRNA:   3'- cGCCacUGGCCG---GAgCCGGUa----CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.