miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23116 3' -59.4 NC_005178.1 + 28214 0.66 0.393914
Target:  5'- -cGGCA-CGCUC--CUGAGC-GGCGCc -3'
miRNA:   3'- guCCGUaGCGGGuuGACUCGgCCGCG- -5'
23116 3' -59.4 NC_005178.1 + 22289 0.66 0.391181
Target:  5'- gCGGGCGaugaaGCCCAGCaGAGCgucgagggcaucuuCGuGCGCa -3'
miRNA:   3'- -GUCCGUag---CGGGUUGaCUCG--------------GC-CGCG- -5'
23116 3' -59.4 NC_005178.1 + 13215 0.66 0.384851
Target:  5'- aUAGGC--CGCUuugaaCGGCUGGGUCGGgGCc -3'
miRNA:   3'- -GUCCGuaGCGG-----GUUGACUCGGCCgCG- -5'
23116 3' -59.4 NC_005178.1 + 34571 0.66 0.384851
Target:  5'- uGGGCGU-GCCUAcCgggGAGCUGGCcggGCg -3'
miRNA:   3'- gUCCGUAgCGGGUuGa--CUCGGCCG---CG- -5'
23116 3' -59.4 NC_005178.1 + 24393 0.66 0.375927
Target:  5'- uGGGCGUgcugcgggaacCGCUCAcggaugaaGCUG-GCCaGGCGCu -3'
miRNA:   3'- gUCCGUA-----------GCGGGU--------UGACuCGG-CCGCG- -5'
23116 3' -59.4 NC_005178.1 + 8879 0.66 0.375927
Target:  5'- uGGGCuccAUCGCCCGGuacauccagaccCUGGGCCaGCa- -3'
miRNA:   3'- gUCCG---UAGCGGGUU------------GACUCGGcCGcg -5'
23116 3' -59.4 NC_005178.1 + 11205 0.66 0.375927
Target:  5'- aGGGguUCGCCCGGCUGuucuGCaccauCGuCGCg -3'
miRNA:   3'- gUCCguAGCGGGUUGACu---CG-----GCcGCG- -5'
23116 3' -59.4 NC_005178.1 + 6248 0.66 0.367143
Target:  5'- cCAGGCGcauaGCCCGgcGCUGGGUcaCGGCu- -3'
miRNA:   3'- -GUCCGUag--CGGGU--UGACUCG--GCCGcg -5'
23116 3' -59.4 NC_005178.1 + 7860 0.66 0.367143
Target:  5'- uGGcGCAUcCGUCCcccguccguGACUGuGCgCGGCGCc -3'
miRNA:   3'- gUC-CGUA-GCGGG---------UUGACuCG-GCCGCG- -5'
23116 3' -59.4 NC_005178.1 + 10640 0.66 0.358502
Target:  5'- gGGGCGcaaCGCCCc----GGCCGGCGUc -3'
miRNA:   3'- gUCCGUa--GCGGGuugacUCGGCCGCG- -5'
23116 3' -59.4 NC_005178.1 + 8732 0.66 0.358502
Target:  5'- cCAGGCGagggcuacuUCGCCCuugccgugggcGACUuGGCCaGCGUg -3'
miRNA:   3'- -GUCCGU---------AGCGGG-----------UUGAcUCGGcCGCG- -5'
23116 3' -59.4 NC_005178.1 + 18916 0.66 0.358502
Target:  5'- -cGGCcUCGCCCAGcCUGAccgcccaacuGCUGGauaGCu -3'
miRNA:   3'- guCCGuAGCGGGUU-GACU----------CGGCCg--CG- -5'
23116 3' -59.4 NC_005178.1 + 14103 0.66 0.358502
Target:  5'- cCGGGCgcccuggccGUCGCCC---UGGGCguCGGCGUa -3'
miRNA:   3'- -GUCCG---------UAGCGGGuugACUCG--GCCGCG- -5'
23116 3' -59.4 NC_005178.1 + 33014 0.66 0.357646
Target:  5'- uGGGCggCGUCCGGCUcGAugggcagGCCGGaGCg -3'
miRNA:   3'- gUCCGuaGCGGGUUGA-CU-------CGGCCgCG- -5'
23116 3' -59.4 NC_005178.1 + 25649 0.67 0.344975
Target:  5'- gCAGGCGUUGCaucaCAGCaccucccgcacggccUGGGCgaucugcuCGGCGCu -3'
miRNA:   3'- -GUCCGUAGCGg---GUUG---------------ACUCG--------GCCGCG- -5'
23116 3' -59.4 NC_005178.1 + 24428 0.67 0.341651
Target:  5'- aGGGCAUCaaCCUGGCcGaAGgCGGCGCg -3'
miRNA:   3'- gUCCGUAGc-GGGUUGaC-UCgGCCGCG- -5'
23116 3' -59.4 NC_005178.1 + 33784 0.67 0.341651
Target:  5'- -cGGCAUggugcCGCCCuugGCgauGGcCCGGCGCg -3'
miRNA:   3'- guCCGUA-----GCGGGu--UGac-UC-GGCCGCG- -5'
23116 3' -59.4 NC_005178.1 + 6805 0.67 0.341651
Target:  5'- aAGGCGUCGauauUCGGCgUGAuGCCGGCa- -3'
miRNA:   3'- gUCCGUAGCg---GGUUG-ACU-CGGCCGcg -5'
23116 3' -59.4 NC_005178.1 + 5888 0.67 0.317461
Target:  5'- gUAGGCuguUCGgUCAGCUGcGCgGuGCGCa -3'
miRNA:   3'- -GUCCGu--AGCgGGUUGACuCGgC-CGCG- -5'
23116 3' -59.4 NC_005178.1 + 33573 0.67 0.317461
Target:  5'- -cGGCAUCGaggCCGACgu-GCUGGuCGCg -3'
miRNA:   3'- guCCGUAGCg--GGUUGacuCGGCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.