miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23116 5' -58.4 NC_005178.1 + 28657 0.66 0.381476
Target:  5'- --cUGCUGGCCCAGGgucugGAUguaccgggcgaUGGAgcCCAg -3'
miRNA:   3'- gacGCGACCGGGUCCa----CUA-----------ACCU--GGU- -5'
23116 5' -58.4 NC_005178.1 + 23541 0.67 0.372493
Target:  5'- -cGUGCUGGCcguCCGGGUGGUcc-ACCAg -3'
miRNA:   3'- gaCGCGACCG---GGUCCACUAaccUGGU- -5'
23116 5' -58.4 NC_005178.1 + 34988 0.67 0.338022
Target:  5'- -cGCGCUGGCCgAGGcGcc--GACCAg -3'
miRNA:   3'- gaCGCGACCGGgUCCaCuaacCUGGU- -5'
23116 5' -58.4 NC_005178.1 + 19665 0.67 0.329775
Target:  5'- -cGCGCUGGCguaCCGGGUccagGAgcacguccUGGACCu -3'
miRNA:   3'- gaCGCGACCG---GGUCCA----CUa-------ACCUGGu -5'
23116 5' -58.4 NC_005178.1 + 12050 0.68 0.321678
Target:  5'- -gGCcCUGGCCCuguuccuGGUGAUgguUGcGACCAg -3'
miRNA:   3'- gaCGcGACCGGGu------CCACUA---AC-CUGGU- -5'
23116 5' -58.4 NC_005178.1 + 13885 0.69 0.28343
Target:  5'- -aGCGCc-GCCCGGcGUGAacGGGCCAg -3'
miRNA:   3'- gaCGCGacCGGGUC-CACUaaCCUGGU- -5'
23116 5' -58.4 NC_005178.1 + 16518 0.69 0.255493
Target:  5'- -aGCGC-GGCCCAGGUaGGUcaGGCCGg -3'
miRNA:   3'- gaCGCGaCCGGGUCCA-CUAacCUGGU- -5'
23116 5' -58.4 NC_005178.1 + 22940 0.69 0.248871
Target:  5'- gCUGcCGCUGGCCCA-GUGccugUGGugCu -3'
miRNA:   3'- -GAC-GCGACCGGGUcCACua--ACCugGu -5'
23116 5' -58.4 NC_005178.1 + 10083 0.69 0.248871
Target:  5'- -gGCGaucuuCUGGUCCAGGcUGAUgcgcUGGGCCGc -3'
miRNA:   3'- gaCGC-----GACCGGGUCC-ACUA----ACCUGGU- -5'
23116 5' -58.4 NC_005178.1 + 26462 0.7 0.242391
Target:  5'- -gGCGCUgccGGCCgAGGUGgAUgcgGGAUCAg -3'
miRNA:   3'- gaCGCGA---CCGGgUCCAC-UAa--CCUGGU- -5'
23116 5' -58.4 NC_005178.1 + 16787 0.71 0.195499
Target:  5'- -aGCGCUGGaCCAGGUGc-UGG-CCAg -3'
miRNA:   3'- gaCGCGACCgGGUCCACuaACCuGGU- -5'
23116 5' -58.4 NC_005178.1 + 10358 0.72 0.175163
Target:  5'- gCUGCGCUGGCCgAGcUGG-UGGGCa- -3'
miRNA:   3'- -GACGCGACCGGgUCcACUaACCUGgu -5'
23116 5' -58.4 NC_005178.1 + 16743 1.08 0.000311
Target:  5'- gCUGCGCUGGCCCAGGUGAUUGGACCAc -3'
miRNA:   3'- -GACGCGACCGGGUCCACUAACCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.