miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23117 3' -55.6 NC_005178.1 + 21471 0.71 0.305128
Target:  5'- cGGCCguGGAguaGUGCuuGaacagguacgGCCAGGCCa -3'
miRNA:   3'- -CCGGguCCUg--UACGuuU----------UGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 529 0.71 0.289841
Target:  5'- cGGUCCAGGAacCGUGCccugcgcucACCuGGCCGu -3'
miRNA:   3'- -CCGGGUCCU--GUACGuuu------UGGuCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 3698 0.71 0.296645
Target:  5'- uGCCCGGcuacaucggcgccGACAUGgAccGCCAGGCCa -3'
miRNA:   3'- cCGGGUC-------------CUGUACgUuuUGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 37137 0.71 0.305128
Target:  5'- aGGUCCAGGAgcUAcGCc--GCCAGGCCu -3'
miRNA:   3'- -CCGGGUCCU--GUaCGuuuUGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 35347 0.7 0.337537
Target:  5'- cGGUcuacagCCAGGGCGUGacgcuCCAGGCCc -3'
miRNA:   3'- -CCG------GGUCCUGUACguuuuGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 35515 0.7 0.367
Target:  5'- aGGUCUacGGGGCGUuaucagugaacuggGCGAAgcgcgaccgcauugGCCAGGCCGa -3'
miRNA:   3'- -CCGGG--UCCUGUA--------------CGUUU--------------UGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 18002 0.7 0.354657
Target:  5'- uGCCCAGGG--UGCccagcuCCAGGCUGg -3'
miRNA:   3'- cCGGGUCCUguACGuuuu--GGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 26728 0.7 0.346021
Target:  5'- cGCCUGGGACGaaaUGCucGGCgUGGGCCGg -3'
miRNA:   3'- cCGGGUCCUGU---ACGuuUUG-GUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 34543 0.7 0.329206
Target:  5'- uGGUCCAGGAa--GCGcu-CCAGGCUGc -3'
miRNA:   3'- -CCGGGUCCUguaCGUuuuGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 5333 0.7 0.329206
Target:  5'- cGGCCCAGGGCG-GCGucgau-GGCCa -3'
miRNA:   3'- -CCGGGUCCUGUaCGUuuugguCCGGc -5'
23117 3' -55.6 NC_005178.1 + 23445 0.69 0.375996
Target:  5'- cGCCCAGGGCGacgGCcagggcgcccggcgcGAAGCCGgcccgcugcucGGCCGg -3'
miRNA:   3'- cCGGGUCCUGUa--CG---------------UUUUGGU-----------CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 28661 0.69 0.390696
Target:  5'- uGGCCCAGGGucUGgAuguACCGGGCg- -3'
miRNA:   3'- -CCGGGUCCUguACgUuu-UGGUCCGgc -5'
23117 3' -55.6 NC_005178.1 + 16750 0.69 0.368788
Target:  5'- uGGCCCAGGugAUuggaccacgcuaccGCGAucaggaagcgcugGACCAGGUg- -3'
miRNA:   3'- -CCGGGUCCugUA--------------CGUU-------------UUGGUCCGgc -5'
23117 3' -55.6 NC_005178.1 + 7076 0.69 0.37238
Target:  5'- cGGCCCuGGGCGagGCGGuGACCucGGUCGa -3'
miRNA:   3'- -CCGGGuCCUGUa-CGUU-UUGGu-CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 10326 0.69 0.409591
Target:  5'- aGGgCCGGGcGCGgagggGCGAAgcgcGCCGGGCUGc -3'
miRNA:   3'- -CCgGGUCC-UGUa----CGUUU----UGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 35704 0.69 0.381465
Target:  5'- uGGCCgAGGACAUgGCGGAugguccgcuCCAGGaCGu -3'
miRNA:   3'- -CCGGgUCCUGUA-CGUUUu--------GGUCCgGC- -5'
23117 3' -55.6 NC_005178.1 + 34163 0.69 0.400072
Target:  5'- uGGCCCGcacgcgaauGGACGagGCGAGcuGgCGGGCCGc -3'
miRNA:   3'- -CCGGGU---------CCUGUa-CGUUU--UgGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 25847 0.69 0.409591
Target:  5'- uGGCCguGGccgGCAUuucgGCAGGucaguaccGCCAGGCCa -3'
miRNA:   3'- -CCGGguCC---UGUA----CGUUU--------UGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 30488 0.69 0.390696
Target:  5'- cGCCCAGGGCcgggcacucaAUGCGGcucagcgcGGCCAGGacaCGa -3'
miRNA:   3'- cCGGGUCCUG----------UACGUU--------UUGGUCCg--GC- -5'
23117 3' -55.6 NC_005178.1 + 35969 0.69 0.416337
Target:  5'- cGGUCguaaaGGGGCGggucGCAAcgcugccgacuuccGGCCAGGCCGa -3'
miRNA:   3'- -CCGGg----UCCUGUa---CGUU--------------UUGGUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.