miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23117 3' -55.6 NC_005178.1 + 17195 0.69 0.381465
Target:  5'- uGCuCCAGGACAUccGCGAcGCCcuGGUCGa -3'
miRNA:   3'- cCG-GGUCCUGUA--CGUUuUGGu-CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 17398 0.72 0.261082
Target:  5'- cGUCCGGGGCGUaGCugAAGACgGGGCUGa -3'
miRNA:   3'- cCGGGUCCUGUA-CG--UUUUGgUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 17518 0.66 0.566839
Target:  5'- aGUCCAGGaaacgGCcgGCAGcgGGCgCGGGCUGg -3'
miRNA:   3'- cCGGGUCC-----UGuaCGUU--UUG-GUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 17639 0.72 0.268046
Target:  5'- aGUCCAGcGCcgGCAAGACC-GGCCa -3'
miRNA:   3'- cCGGGUCcUGuaCGUUUUGGuCCGGc -5'
23117 3' -55.6 NC_005178.1 + 17805 0.66 0.600562
Target:  5'- cGCCCugauGGACcagGUGCuguACaacaAGGCCGa -3'
miRNA:   3'- cCGGGu---CCUG---UACGuuuUGg---UCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 17873 0.77 0.126956
Target:  5'- aGGUCCAGGACGUGCuccuGGACCcGGUa- -3'
miRNA:   3'- -CCGGGUCCUGUACGu---UUUGGuCCGgc -5'
23117 3' -55.6 NC_005178.1 + 18002 0.7 0.354657
Target:  5'- uGCCCAGGG--UGCccagcuCCAGGCUGg -3'
miRNA:   3'- cCGGGUCCUguACGuuuu--GGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 19679 0.66 0.600562
Target:  5'- gGGUCCAGGAgCAcGUccuGGACCucGCCGa -3'
miRNA:   3'- -CCGGGUCCU-GUaCGu--UUUGGucCGGC- -5'
23117 3' -55.6 NC_005178.1 + 19878 0.72 0.267343
Target:  5'- uGGCCCAuGGAUggGCGcccuaugGAuguGCCGGGCUGg -3'
miRNA:   3'- -CCGGGU-CCUGuaCGU-------UU---UGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 20394 0.76 0.146483
Target:  5'- cGGCCCuGGACGcccagGCGAccAACCuGGCCa -3'
miRNA:   3'- -CCGGGuCCUGUa----CGUU--UUGGuCCGGc -5'
23117 3' -55.6 NC_005178.1 + 20448 0.68 0.459216
Target:  5'- uGGCCCAGGACGcggacgucgaGCAGAucGCCGccGCCa -3'
miRNA:   3'- -CCGGGUCCUGUa---------CGUUU--UGGUc-CGGc -5'
23117 3' -55.6 NC_005178.1 + 20683 0.66 0.549046
Target:  5'- cGGCgCCaAGGACuuggccgGCuugaagagcuaccuGGGCCAGGCCa -3'
miRNA:   3'- -CCG-GG-UCCUGua-----CGu-------------UUUGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 20708 0.67 0.479945
Target:  5'- -aUCCAGGAgcgGCGcGACCAGGCUa -3'
miRNA:   3'- ccGGGUCCUguaCGUuUUGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 20887 0.68 0.459216
Target:  5'- cGCCCAGGACc-GCcucGCCAuuGGCUGg -3'
miRNA:   3'- cCGGGUCCUGuaCGuuuUGGU--CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 21009 0.66 0.578036
Target:  5'- cGCCguGGGCGgcaGCAccGCCAccGGCCu -3'
miRNA:   3'- cCGGguCCUGUa--CGUuuUGGU--CCGGc -5'
23117 3' -55.6 NC_005178.1 + 21009 0.67 0.479945
Target:  5'- cGGCCCGGucCuugagGUcgAAGACCAGGCgGg -3'
miRNA:   3'- -CCGGGUCcuGua---CG--UUUUGGUCCGgC- -5'
23117 3' -55.6 NC_005178.1 + 21471 0.71 0.305128
Target:  5'- cGGCCguGGAguaGUGCuuGaacagguacgGCCAGGCCa -3'
miRNA:   3'- -CCGGguCCUg--UACGuuU----------UGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 22674 0.74 0.197153
Target:  5'- aGCCCAGGGCGaccucgcCCAGGCCGa -3'
miRNA:   3'- cCGGGUCCUGUacguuuuGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 23355 0.72 0.261082
Target:  5'- cGGCaCCGGGGCGUcGC---ACCAGGgCGg -3'
miRNA:   3'- -CCG-GGUCCUGUA-CGuuuUGGUCCgGC- -5'
23117 3' -55.6 NC_005178.1 + 23445 0.69 0.375996
Target:  5'- cGCCCAGGGCGacgGCcagggcgcccggcgcGAAGCCGgcccgcugcucGGCCGg -3'
miRNA:   3'- cCGGGUCCUGUa--CG---------------UUUUGGU-----------CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.