miRNA display CGI


Results 41 - 60 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23117 3' -55.6 NC_005178.1 + 34163 0.69 0.400072
Target:  5'- uGGCCCGcacgcgaauGGACGagGCGAGcuGgCGGGCCGc -3'
miRNA:   3'- -CCGGGU---------CCUGUa-CGUUU--UgGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 35704 0.69 0.381465
Target:  5'- uGGCCgAGGACAUgGCGGAugguccgcuCCAGGaCGu -3'
miRNA:   3'- -CCGGgUCCUGUA-CGUUUu--------GGUCCgGC- -5'
23117 3' -55.6 NC_005178.1 + 17195 0.69 0.381465
Target:  5'- uGCuCCAGGACAUccGCGAcGCCcuGGUCGa -3'
miRNA:   3'- cCG-GGUCCUGUA--CGUUuUGGu-CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 23445 0.69 0.375996
Target:  5'- cGCCCAGGGCGacgGCcagggcgcccggcgcGAAGCCGgcccgcugcucGGCCGg -3'
miRNA:   3'- cCGGGUCCUGUa--CG---------------UUUUGGU-----------CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 7076 0.69 0.37238
Target:  5'- cGGCCCuGGGCGagGCGGuGACCucGGUCGa -3'
miRNA:   3'- -CCGGGuCCUGUa-CGUU-UUGGu-CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 16750 0.69 0.368788
Target:  5'- uGGCCCAGGugAUuggaccacgcuaccGCGAucaggaagcgcugGACCAGGUg- -3'
miRNA:   3'- -CCGGGUCCugUA--------------CGUU-------------UUGGUCCGgc -5'
23117 3' -55.6 NC_005178.1 + 35515 0.7 0.367
Target:  5'- aGGUCUacGGGGCGUuaucagugaacuggGCGAAgcgcgaccgcauugGCCAGGCCGa -3'
miRNA:   3'- -CCGGG--UCCUGUA--------------CGUUU--------------UGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 18002 0.7 0.354657
Target:  5'- uGCCCAGGG--UGCccagcuCCAGGCUGg -3'
miRNA:   3'- cCGGGUCCUguACGuuuu--GGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 26728 0.7 0.346021
Target:  5'- cGCCUGGGACGaaaUGCucGGCgUGGGCCGg -3'
miRNA:   3'- cCGGGUCCUGU---ACGuuUUG-GUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 27884 0.67 0.533621
Target:  5'- cGCCUcGGcCGgcucgGCGAAGCCAccGGCCGc -3'
miRNA:   3'- cCGGGuCCuGUa----CGUUUUGGU--CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 6495 0.67 0.522698
Target:  5'- -aCCCAGcGGCG-GCGAcGCCuGGCCa -3'
miRNA:   3'- ccGGGUC-CUGUaCGUUuUGGuCCGGc -5'
23117 3' -55.6 NC_005178.1 + 32801 0.67 0.511862
Target:  5'- aGCCggaCGGGcCGUagaaGC-AGACCAGGCCGg -3'
miRNA:   3'- cCGG---GUCCuGUA----CGuUUUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 27243 0.67 0.509706
Target:  5'- cGGCCCucggcuauccgccAGGACGUGCcgccGAGcugcucgacuaccACCAgcguGGCCGg -3'
miRNA:   3'- -CCGGG-------------UCCUGUACG----UUU-------------UGGU----CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 25397 0.67 0.501121
Target:  5'- uGCuCCAGGACGUcGCGguAGGCgCGGGUCu -3'
miRNA:   3'- cCG-GGUCCUGUA-CGU--UUUG-GUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 25514 0.67 0.501121
Target:  5'- aGGgCCAGGGCcaaGCcGAggcGCCAGGUCa -3'
miRNA:   3'- -CCgGGUCCUGua-CGuUU---UGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 13289 0.67 0.479945
Target:  5'- cGGCUcgCAGGGCGuaauacUGCGGGucgaggggcGCCGGGCUGc -3'
miRNA:   3'- -CCGG--GUCCUGU------ACGUUU---------UGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 3623 0.67 0.479945
Target:  5'- cGCCCcGGaaaGCcgGC---ACCAGGCCGc -3'
miRNA:   3'- cCGGGuCC---UGuaCGuuuUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 25564 0.67 0.479945
Target:  5'- aGCCCGGuaccaGCccGCAccaGGGCUAGGCCGg -3'
miRNA:   3'- cCGGGUCc----UGuaCGU---UUUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 21009 0.67 0.479945
Target:  5'- cGGCCCGGucCuugagGUcgAAGACCAGGCgGg -3'
miRNA:   3'- -CCGGGUCcuGua---CG--UUUUGGUCCGgC- -5'
23117 3' -55.6 NC_005178.1 + 20708 0.67 0.479945
Target:  5'- -aUCCAGGAgcgGCGcGACCAGGCUa -3'
miRNA:   3'- ccGGGUCCUguaCGUuUUGGUCCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.